64 items (Erythrura gouldiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ROCK1	Rho-associated protein kinase; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity. (1366 aa)
	CFL2	ADF-H domain-containing protein; Belongs to the actin-binding proteins ADF family. (165 aa)
	RHOB	Uncharacterized protein. (196 aa)
	ROCK2	Uncharacterized protein; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1388 aa)
	RHOV	Uncharacterized protein. (231 aa)
	ARHGAP1	Uncharacterized protein. (437 aa)
	DIAPH3	Uncharacterized protein. (1137 aa)
	DAAM2	Uncharacterized protein. (1056 aa)
	PPP1CB	Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
	DAAM1	Uncharacterized protein. (1069 aa)
	RHOJ	Uncharacterized protein. (214 aa)
	FHDC1	FH2 domain-containing protein. (1137 aa)
	PKN2	Uncharacterized protein. (985 aa)
	RHOH	Ras homolog family member H. (191 aa)
	ARHGAP12	Uncharacterized protein. (793 aa)
	IQGAP2	Uncharacterized protein. (1659 aa)
	KALRN	Uncharacterized protein. (2985 aa)
	RAC1	Uncharacterized protein. (190 aa)
	PAK1	P21 (RAC1) activated kinase 1. (544 aa)
	DV515_00007823	Uncharacterized protein. (378 aa)
	ARHGDIG	Uncharacterized protein. (226 aa)
	ARHGEF7	Uncharacterized protein. (803 aa)
	NCK2	Uncharacterized protein. (380 aa)
	ENSEGOP00005011198	annotation not available (259 aa)
	IQGAP3	Uncharacterized protein. (1624 aa)
	RHOU	Uncharacterized protein. (279 aa)
	DV515_00014322	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2073 aa)
	DV515_00014353	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2084 aa)
	INKA1	FAM212 domain-containing protein. (269 aa)
	GIT1	Uncharacterized protein. (706 aa)
	ENSEGOP00005013453	annotation not available (145 aa)
	DV515_00011271	Uncharacterized protein. (610 aa)
	RHOF	Uncharacterized protein. (231 aa)
	ENSEGOP00005015661	annotation not available (610 aa)
	ARHGDIA	RRM domain-containing protein. (204 aa)
	PPP1R12A	Protein phosphatase 1 regulatory subunit. (1034 aa)
	IQGAP1	Uncharacterized protein. (1501 aa)
	LIMK2	Uncharacterized protein. (661 aa)
	BCR	Uncharacterized protein. (1349 aa)
	ARHGDIB	Uncharacterized protein. (200 aa)
	DV515_00012897	ANK_REP_REGION domain-containing protein. (904 aa)
	DV515_00012899	PRKG1_interact domain-containing protein. (223 aa)
	FMNL3	Uncharacterized protein. (509 aa)
	DV515_00012929	Uncharacterized protein. (314 aa)
	RHOD	Uncharacterized protein. (171 aa)
	CDC42	Uncharacterized protein. (213 aa)
	DV515_00007062	CRIB domain-containing protein. (543 aa)
	ENSEGOP00005020303	annotation not available (104 aa)
	RHOBTB3	Uncharacterized protein. (607 aa)
	DV515_00012233	Uncharacterized protein. (328 aa)
	DV515_00017881	Non-specific serine/threonine protein kinase. (573 aa)
	ENSEGOP00005021165	annotation not available (110 aa)
	ENSEGOP00005021554	annotation not available (44 aa)
	DV515_00015167	Uncharacterized protein. (849 aa)
	PFN1	Profilin 1. (134 aa)
	DV515_00019161	Profilin; Belongs to the profilin family. (91 aa)
	ENSEGOP00005022587	annotation not available (72 aa)
	ENSEGOP00005022778	annotation not available (72 aa)
	DIAPH2	Uncharacterized protein. (1194 aa)
	DV515_00011796	FH2 domain-containing protein. (730 aa)
	ARHGEF6	Uncharacterized protein. (788 aa)
	MYO9A	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2640 aa)
	PAK6	Non-specific serine/threonine protein kinase. (662 aa)
	PAK2	P21 (RAC1) activated kinase 2. (525 aa)

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGAP1	ARHGAP12	ENSEGOP00005001555	ENSEGOP00005006772	Uncharacterized protein.	Uncharacterized protein.	0.468
ARHGAP1	ARHGEF6	ENSEGOP00005001555	ENSEGOP00005023027	Uncharacterized protein.	Uncharacterized protein.	0.518
ARHGAP1	ARHGEF7	ENSEGOP00005001555	ENSEGOP00005009775	Uncharacterized protein.	Uncharacterized protein.	0.518
ARHGAP1	BCR	ENSEGOP00005001555	ENSEGOP00005017895	Uncharacterized protein.	Uncharacterized protein.	0.592
ARHGAP1	CDC42	ENSEGOP00005001555	ENSEGOP00005019312	Uncharacterized protein.	Uncharacterized protein.	0.967
ARHGAP1	DAAM1	ENSEGOP00005001555	ENSEGOP00005003686	Uncharacterized protein.	Uncharacterized protein.	0.488
ARHGAP1	DAAM2	ENSEGOP00005001555	ENSEGOP00005002887	Uncharacterized protein.	Uncharacterized protein.	0.488
ARHGAP1	DIAPH2	ENSEGOP00005001555	ENSEGOP00005022908	Uncharacterized protein.	Uncharacterized protein.	0.565
ARHGAP1	DIAPH3	ENSEGOP00005001555	ENSEGOP00005002523	Uncharacterized protein.	Uncharacterized protein.	0.565
ARHGAP1	DV515_00007823	ENSEGOP00005001555	ENSEGOP00005008334	Uncharacterized protein.	Uncharacterized protein.	0.479
ARHGAP1	DV515_00011796	ENSEGOP00005001555	ENSEGOP00005023000	Uncharacterized protein.	FH2 domain-containing protein.	0.446
ARHGAP1	DV515_00012233	ENSEGOP00005001555	ENSEGOP00005020825	Uncharacterized protein.	Uncharacterized protein.	0.760
ARHGAP1	DV515_00014322	ENSEGOP00005001555	ENSEGOP00005011992	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.945
ARHGAP1	DV515_00014353	ENSEGOP00005001555	ENSEGOP00005012570	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.945
ARHGAP1	DV515_00017881	ENSEGOP00005001555	ENSEGOP00005021159	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.446
ARHGAP1	ENSEGOP00005021165	ENSEGOP00005001555	ENSEGOP00005021165	Uncharacterized protein.	annotation not available	0.446
ARHGAP1	FHDC1	ENSEGOP00005001555	ENSEGOP00005004503	Uncharacterized protein.	FH2 domain-containing protein.	0.488
ARHGAP1	IQGAP1	ENSEGOP00005001555	ENSEGOP00005017084	Uncharacterized protein.	Uncharacterized protein.	0.569
ARHGAP1	IQGAP2	ENSEGOP00005001555	ENSEGOP00005006901	Uncharacterized protein.	Uncharacterized protein.	0.569
ARHGAP1	IQGAP3	ENSEGOP00005001555	ENSEGOP00005011466	Uncharacterized protein.	Uncharacterized protein.	0.569