5 items (Erythrura gouldiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DV515_00015073	Uncharacterized protein. (329 aa)
	STARD3NL	MENTAL domain-containing protein. (234 aa)
	MOSPD2	Uncharacterized protein. (518 aa)
	STARD3	Uncharacterized protein. (442 aa)
	DV515_00015074	Uncharacterized protein. (227 aa)

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DV515_00015073	DV515_00015074	ENSEGOP00005020350	ENSEGOP00005020355	Uncharacterized protein.	Uncharacterized protein.	0.899
DV515_00015074	DV515_00015073	ENSEGOP00005020355	ENSEGOP00005020350	Uncharacterized protein.	Uncharacterized protein.	0.899
MOSPD2	STARD3	ENSEGOP00005009567	ENSEGOP00005010174	Uncharacterized protein.	Uncharacterized protein.	0.902
STARD3	MOSPD2	ENSEGOP00005010174	ENSEGOP00005009567	Uncharacterized protein.	Uncharacterized protein.	0.902
STARD3	STARD3NL	ENSEGOP00005010174	ENSEGOP00005003567	Uncharacterized protein.	MENTAL domain-containing protein.	0.845
STARD3NL	STARD3	ENSEGOP00005003567	ENSEGOP00005010174	MENTAL domain-containing protein.	Uncharacterized protein.	0.845