(20 nodes) Guanine-nucleotide dissociation stimulator, CDC24, conserved site network (Erythrura gouldiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARHGEF6	Uncharacterized protein. (788 aa)
	PREX2	Uncharacterized protein. (1606 aa)
	ARHGEF38	Uncharacterized protein. (730 aa)
	ECT2	Uncharacterized protein. (913 aa)
	TIAM1	Uncharacterized protein. (1604 aa)
	VAV2	Uncharacterized protein. (844 aa)
	ARHGEF3	Uncharacterized protein. (572 aa)
	ARHGEF7	Uncharacterized protein. (803 aa)
	MCF2L	Uncharacterized protein. (1157 aa)
	DNMBP	Uncharacterized protein. (1526 aa)
	RASGRF1	Uncharacterized protein. (1258 aa)
	DV515_00015282	Uncharacterized protein. (1071 aa)
	ARHGEF12	Uncharacterized protein. (1623 aa)
	PLEKHG7	Uncharacterized protein. (378 aa)
	ITSN1	Uncharacterized protein. (1710 aa)
	BCR	Uncharacterized protein. (1349 aa)
	NET1	Uncharacterized protein. (576 aa)
	ABR	Uncharacterized protein. (971 aa)
	ARHGEF4	Uncharacterized protein. (585 aa)
	MCF2	Uncharacterized protein. (1113 aa)

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARHGEF12	ARHGEF6	ENSEGOP00005016516	ENSEGOP00005023027	Uncharacterized protein.	Uncharacterized protein.	0.960
ARHGEF12	ARHGEF7	ENSEGOP00005016516	ENSEGOP00005009775	Uncharacterized protein.	Uncharacterized protein.	0.933
ARHGEF12	ECT2	ENSEGOP00005016516	ENSEGOP00005006120	Uncharacterized protein.	Uncharacterized protein.	0.703
ARHGEF12	ITSN1	ENSEGOP00005016516	ENSEGOP00005017472	Uncharacterized protein.	Uncharacterized protein.	0.575
ARHGEF12	MCF2	ENSEGOP00005016516	ENSEGOP00005023005	Uncharacterized protein.	Uncharacterized protein.	0.403
ARHGEF12	RASGRF1	ENSEGOP00005016516	ENSEGOP00005010952	Uncharacterized protein.	Uncharacterized protein.	0.402
ARHGEF12	TIAM1	ENSEGOP00005016516	ENSEGOP00005006689	Uncharacterized protein.	Uncharacterized protein.	0.547
ARHGEF12	VAV2	ENSEGOP00005016516	ENSEGOP00005007759	Uncharacterized protein.	Uncharacterized protein.	0.444
ARHGEF38	ITSN1	ENSEGOP00005004247	ENSEGOP00005017472	Uncharacterized protein.	Uncharacterized protein.	0.485
ARHGEF4	ITSN1	ENSEGOP00005019748	ENSEGOP00005017472	Uncharacterized protein.	Uncharacterized protein.	0.485
ARHGEF6	ARHGEF12	ENSEGOP00005023027	ENSEGOP00005016516	Uncharacterized protein.	Uncharacterized protein.	0.960
ARHGEF6	ARHGEF7	ENSEGOP00005023027	ENSEGOP00005009775	Uncharacterized protein.	Uncharacterized protein.	0.922
ARHGEF6	ECT2	ENSEGOP00005023027	ENSEGOP00005006120	Uncharacterized protein.	Uncharacterized protein.	0.483
ARHGEF6	ITSN1	ENSEGOP00005023027	ENSEGOP00005017472	Uncharacterized protein.	Uncharacterized protein.	0.646
ARHGEF7	ARHGEF12	ENSEGOP00005009775	ENSEGOP00005016516	Uncharacterized protein.	Uncharacterized protein.	0.933
ARHGEF7	ARHGEF6	ENSEGOP00005009775	ENSEGOP00005023027	Uncharacterized protein.	Uncharacterized protein.	0.922
ARHGEF7	ECT2	ENSEGOP00005009775	ENSEGOP00005006120	Uncharacterized protein.	Uncharacterized protein.	0.483
ARHGEF7	ITSN1	ENSEGOP00005009775	ENSEGOP00005017472	Uncharacterized protein.	Uncharacterized protein.	0.646
DNMBP	ITSN1	ENSEGOP00005010363	ENSEGOP00005017472	Uncharacterized protein.	Uncharacterized protein.	0.485
DV515_00015282	ITSN1	ENSEGOP00005011390	ENSEGOP00005017472	Uncharacterized protein.	Uncharacterized protein.	0.485