50 items (Erythrura gouldiae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RAB33A	Uncharacterized protein. (208 aa)
	RAB14	Uncharacterized protein. (249 aa)
	RAB26	Uncharacterized protein. (190 aa)
	RAB21	Uncharacterized protein. (220 aa)
	DV515_00014121	Uncharacterized protein. (216 aa)
	RAB36	Uncharacterized protein. (301 aa)
	RAB43	Uncharacterized protein. (215 aa)
	RAB3B	Uncharacterized protein. (220 aa)
	DV515_00016542	Uncharacterized protein. (218 aa)
	RAB41	RAB41, member RAS oncogene family. (221 aa)
	RAB22A	Uncharacterized protein. (194 aa)
	RAB33B	Uncharacterized protein. (228 aa)
	RAB8B	Uncharacterized protein. (201 aa)
	RAB27A	Uncharacterized protein. (221 aa)
	DV515_00000234	Uncharacterized protein. (210 aa)
	RAB2A	Uncharacterized protein. (212 aa)
	RAB39A	Uncharacterized protein. (249 aa)
	RAB38	RAB38, member RAS oncogene family. (212 aa)
	RAB30	RAB30, member RAS oncogene family. (203 aa)
	RAB1A	Uncharacterized protein. (204 aa)
	RAB5A	Uncharacterized protein. (215 aa)
	RAB3C	RAB3C, member RAS oncogene family. (219 aa)
	RAB11A	Uncharacterized protein. (216 aa)
	RAB35	Uncharacterized protein. (201 aa)
	RAB6A	Uncharacterized protein. (208 aa)
	RAB18	Uncharacterized protein. (207 aa)
	RAB19	Uncharacterized protein. (224 aa)
	CRACR2A	Calcium release activated channel regulator 2A. (701 aa)
	RAB7A	Uncharacterized protein. (207 aa)
	RASEF	Uncharacterized protein. (709 aa)
	RAB9A	Uncharacterized protein. (201 aa)
	RAB37	Uncharacterized protein. (244 aa)
	DV515_00014246	Uncharacterized protein. (217 aa)
	DV515_00015224	Uncharacterized protein. (205 aa)
	RAB8A	Uncharacterized protein. (219 aa)
	RAB17	Uncharacterized protein. (184 aa)
	DV515_00017419	Uncharacterized protein. (300 aa)
	RAB31	MSP domain-containing protein. (382 aa)
	DV515_00015291	Uncharacterized protein. (216 aa)
	RAB25	Robl_LC7 domain-containing protein. (212 aa)
	RAB4A	Uncharacterized protein. (222 aa)
	DV515_00017601	Uncharacterized protein. (198 aa)
	DV515_00017596	Uncharacterized protein. (200 aa)
	ENSEGOP00005012652	annotation not available (331 aa)
	ENSEGOP00005012693	annotation not available (200 aa)
	RAB34	Uncharacterized protein. (260 aa)
	DV515_00019528	Uncharacterized protein. (173 aa)
	DV515_00019553	Uncharacterized protein. (173 aa)
	RAB40C	SOCS box domain-containing protein. (285 aa)
	DV515_00014578	EF-hand domain-containing protein. (1786 aa)

Your Current Organism:

Erythrura gouldiae

NCBI taxonomy Id: 44316
Other names: Chloebia gouldiae, Chloebia gouldiae gouldiae, E. gouldiae, Gouldian finch

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DV515_00000234	DV515_00015291	ENSEGOP00005000275	ENSEGOP00005011427	Uncharacterized protein.	Uncharacterized protein.	0.472
DV515_00000234	DV515_00016542	ENSEGOP00005000275	ENSEGOP00005020621	Uncharacterized protein.	Uncharacterized protein.	0.471
DV515_00000234	RAB11A	ENSEGOP00005000275	ENSEGOP00005005653	Uncharacterized protein.	Uncharacterized protein.	0.470
DV515_00000234	RAB14	ENSEGOP00005000275	ENSEGOP00005015906	Uncharacterized protein.	Uncharacterized protein.	0.446
DV515_00000234	RAB1A	ENSEGOP00005000275	ENSEGOP00005002850	Uncharacterized protein.	Uncharacterized protein.	0.697
DV515_00000234	RAB33A	ENSEGOP00005000275	ENSEGOP00005015595	Uncharacterized protein.	Uncharacterized protein.	0.401
DV515_00000234	RAB4A	ENSEGOP00005000275	ENSEGOP00005011722	Uncharacterized protein.	Uncharacterized protein.	0.446
DV515_00014121	DV515_00015291	ENSEGOP00005017435	ENSEGOP00005011427	Uncharacterized protein.	Uncharacterized protein.	0.441
DV515_00014121	DV515_00016542	ENSEGOP00005017435	ENSEGOP00005020621	Uncharacterized protein.	Uncharacterized protein.	0.441
DV515_00014121	DV515_00017596	ENSEGOP00005017435	ENSEGOP00005012642	Uncharacterized protein.	Uncharacterized protein.	0.412
DV515_00014121	DV515_00017601	ENSEGOP00005017435	ENSEGOP00005012588	Uncharacterized protein.	Uncharacterized protein.	0.412
DV515_00014121	ENSEGOP00005012652	ENSEGOP00005017435	ENSEGOP00005012652	Uncharacterized protein.	annotation not available	0.415
DV515_00014121	ENSEGOP00005012693	ENSEGOP00005017435	ENSEGOP00005012693	Uncharacterized protein.	annotation not available	0.412
DV515_00014121	RAB11A	ENSEGOP00005017435	ENSEGOP00005005653	Uncharacterized protein.	Uncharacterized protein.	0.443
DV515_00014121	RAB14	ENSEGOP00005017435	ENSEGOP00005015906	Uncharacterized protein.	Uncharacterized protein.	0.563
DV515_00014121	RAB1A	ENSEGOP00005017435	ENSEGOP00005002850	Uncharacterized protein.	Uncharacterized protein.	0.440
DV515_00014121	RAB2A	ENSEGOP00005017435	ENSEGOP00005000340	Uncharacterized protein.	Uncharacterized protein.	0.433
DV515_00014121	RAB36	ENSEGOP00005017435	ENSEGOP00005017889	Uncharacterized protein.	Uncharacterized protein.	0.406
DV515_00014121	RAB41	ENSEGOP00005017435	ENSEGOP00005021486	Uncharacterized protein.	RAB41, member RAS oncogene family.	0.481
DV515_00014121	RAB4A	ENSEGOP00005017435	ENSEGOP00005011722	Uncharacterized protein.	Uncharacterized protein.	0.471