(6 nodes) Mixed, incl. PRC1 complex, and Regulation of cell cycle checkpoint network (Nelumbo nucifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC104589419	Uncharacterized zinc finger protein At4g06634. (370 aa)
	LOC104591495	Uncharacterized protein LOC104591495. (99 aa)
	LOC104592562	Putative nuclease HARBI1. (433 aa)
	LOC104593323	Anaphase-promoting complex subunit 13 isoform X1. (73 aa)
	LOC104598624	Putative nuclease HARBI1. (392 aa)
	LOC109115881	Uncharacterized protein LOC109115881. (94 aa)

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104589419	LOC104592562	A0A1U7Z1V6	A0A1U7ZFU5	Uncharacterized zinc finger protein At4g06634.	Putative nuclease HARBI1.	0.540
LOC104589419	LOC104598624	A0A1U7Z1V6	A0A1U7ZYY6	Uncharacterized zinc finger protein At4g06634.	Putative nuclease HARBI1.	0.540
LOC104591495	LOC104593323	A0A1U7ZBT2	A0A1U7ZRI6	Uncharacterized protein LOC104591495.	Anaphase-promoting complex subunit 13 isoform X1.	0.415
LOC104591495	LOC109115881	A0A1U7ZBT2	A0A1U8QCI9	Uncharacterized protein LOC104591495.	Uncharacterized protein LOC109115881.	0.495
LOC104592562	LOC104589419	A0A1U7ZFU5	A0A1U7Z1V6	Putative nuclease HARBI1.	Uncharacterized zinc finger protein At4g06634.	0.540
LOC104592562	LOC104593323	A0A1U7ZFU5	A0A1U7ZRI6	Putative nuclease HARBI1.	Anaphase-promoting complex subunit 13 isoform X1.	0.540
LOC104592562	LOC104598624	A0A1U7ZFU5	A0A1U7ZYY6	Putative nuclease HARBI1.	Putative nuclease HARBI1.	0.613
LOC104593323	LOC104591495	A0A1U7ZRI6	A0A1U7ZBT2	Anaphase-promoting complex subunit 13 isoform X1.	Uncharacterized protein LOC104591495.	0.415
LOC104593323	LOC104592562	A0A1U7ZRI6	A0A1U7ZFU5	Anaphase-promoting complex subunit 13 isoform X1.	Putative nuclease HARBI1.	0.540
LOC104593323	LOC104598624	A0A1U7ZRI6	A0A1U7ZYY6	Anaphase-promoting complex subunit 13 isoform X1.	Putative nuclease HARBI1.	0.540
LOC104598624	LOC104589419	A0A1U7ZYY6	A0A1U7Z1V6	Putative nuclease HARBI1.	Uncharacterized zinc finger protein At4g06634.	0.540
LOC104598624	LOC104592562	A0A1U7ZYY6	A0A1U7ZFU5	Putative nuclease HARBI1.	Putative nuclease HARBI1.	0.613
LOC104598624	LOC104593323	A0A1U7ZYY6	A0A1U7ZRI6	Putative nuclease HARBI1.	Anaphase-promoting complex subunit 13 isoform X1.	0.540
LOC109115881	LOC104591495	A0A1U8QCI9	A0A1U7ZBT2	Uncharacterized protein LOC109115881.	Uncharacterized protein LOC104591495.	0.495