(37 nodes) Heterochromatin assembly network (Nelumbo nucifera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC104607713	SNF2 domain-containing protein CLASSY 1-like. (1294 aa)
	LOC104602702	Uncharacterized protein LOC104602702. (1248 aa)
	LOC104605276	Flowering time control protein FPA-like. (1005 aa)
	LOC104602742	Histone-lysine N-methyltransferase family member SUVH9-like. (656 aa)
	LOC104595051	Uncharacterized protein LOC104595051 isoform X1. (2201 aa)
	LOC104610276	Chromo domain-containing protein LHP1-like. (407 aa)
	LOC104610565	Protein CHROMATIN REMODELING 35 isoform X1. (1031 aa)
	LOC104608520	Factor of DNA methylation 4-like. (297 aa)
	LOC104606710	Histone-lysine N-methyltransferase CLF-like isoform X1. (928 aa)
	LOC104603333	Factor of DNA methylation 1-like isoform X1. (633 aa)
	LOC104606694	Uncharacterized protein LOC104606694. (1047 aa)
	LOC104605587	Zinc finger protein ZOP1. (260 aa)
	LOC104601884	ATP-dependent DNA helicase DDM1. (755 aa)
	LOC104601735	Histone-lysine N-methyltransferase CLF-like isoform X1. (966 aa)
	LOC104604430	Histone acetyltransferase type B catalytic subunit. (465 aa)
	LOC104600986	Histone-lysine N-methyltransferase family member SUVH9-like. (654 aa)
	LOC104604779	Protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1. (424 aa)
	LOC104601887	Uncharacterized protein LOC104601887. (473 aa)
	LOC104598779	Histone-lysine N-methyltransferase EZA1 isoform X1. (878 aa)
	LOC104598258	Flowering time control protein FPA isoform X1. (1038 aa)
	LOC104601279	Helicase protein MOM1-like isoform X1. (2569 aa)
	LOC104594923	Uncharacterized protein LOC104594923 isoform X1. (1444 aa)
	LOC104597179	Protein INVOLVED IN DE NOVO 2-like. (642 aa)
	LOC104597154	Uncharacterized protein LOC104597154. (261 aa)
	LOC104593141	Protein MICRORCHIDIA 6 isoform X1. (721 aa)
	LOC104595716	Uncharacterized protein LOC104595716. (471 aa)
	LOC104590698	DUF724 domain-containing protein 3. (294 aa)
	LOC104593398	Chromo domain-containing protein LHP1-like isoform X1. (438 aa)
	LOC104589501	Increased DNA methylation 1-like. (587 aa)
	LOC104587716	Protein RRP6-like 2. (931 aa)
	LOC104591500	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (286 aa)
	LOC104589782	Helicase-like transcription factor CHR28 isoform X1. (1074 aa)
	LOC104588885	Protein STABILIZED1. (1020 aa)
	LOC104588747	DNA polymerase epsilon subunit 3. (153 aa)
	LOC104587946	Chromatin assembly factor 1 subunit FAS2 isoform X1. (463 aa)
	LOC104587355	Protein RNA-directed DNA methylation 3. (1667 aa)
	LOC104609843	SNF2 domain-containing protein CLASSY 3-like. (1235 aa)

Your Current Organism:

Nelumbo nucifera

NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC104587355	LOC104593141	A0A1U7YVB5	A0A1U7ZSD3	Protein RNA-directed DNA methylation 3.	Protein MICRORCHIDIA 6 isoform X1.	0.420
LOC104587355	LOC104600986	A0A1U7YVB5	A0A1U8AIZ4	Protein RNA-directed DNA methylation 3.	Histone-lysine N-methyltransferase family member SUVH9-like.	0.415
LOC104587355	LOC104602742	A0A1U7YVB5	A0A1U8Q5Z8	Protein RNA-directed DNA methylation 3.	Histone-lysine N-methyltransferase family member SUVH9-like.	0.415
LOC104587355	LOC104604779	A0A1U7YVB5	A0A1U8AIR3	Protein RNA-directed DNA methylation 3.	Protein DEFECTIVE IN MERISTEM SILENCING 3 isoform X1.	0.569
LOC104587355	LOC104610565	A0A1U7YVB5	A0A1U8B3X1	Protein RNA-directed DNA methylation 3.	Protein CHROMATIN REMODELING 35 isoform X1.	0.515
LOC104587716	LOC104591500	A0A1U7Z9E7	A0A1U7Z5T9	Protein RRP6-like 2.	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	0.560
LOC104587946	LOC104593398	A0A1U7YX49	A0A1U7ZF52	Chromatin assembly factor 1 subunit FAS2 isoform X1.	Chromo domain-containing protein LHP1-like isoform X1.	0.673
LOC104587946	LOC104604430	A0A1U7YX49	A0A1U8ALY4	Chromatin assembly factor 1 subunit FAS2 isoform X1.	Histone acetyltransferase type B catalytic subunit.	0.459
LOC104587946	LOC104610276	A0A1U7YX49	A0A1U8B6J7	Chromatin assembly factor 1 subunit FAS2 isoform X1.	Chromo domain-containing protein LHP1-like.	0.673
LOC104588747	LOC104595716	A0A1U7YZN1	A0A1U7ZS58	DNA polymerase epsilon subunit 3.	Uncharacterized protein LOC104595716.	0.709
LOC104588747	LOC104601884	A0A1U7YZN1	A0A1U8AMN7	DNA polymerase epsilon subunit 3.	ATP-dependent DNA helicase DDM1.	0.709
LOC104588747	LOC104601887	A0A1U7YZN1	A0A1U8ADV7	DNA polymerase epsilon subunit 3.	Uncharacterized protein LOC104601887.	0.709
LOC104588747	LOC104607713	A0A1U7YZN1	A0A1U8QAC2	DNA polymerase epsilon subunit 3.	SNF2 domain-containing protein CLASSY 1-like.	0.449
LOC104588747	LOC104609843	A0A1U7YZN1	A0A1U8QB99	DNA polymerase epsilon subunit 3.	SNF2 domain-containing protein CLASSY 3-like.	0.449
LOC104588747	LOC104610565	A0A1U7YZN1	A0A1U8B3X1	DNA polymerase epsilon subunit 3.	Protein CHROMATIN REMODELING 35 isoform X1.	0.449
LOC104588885	LOC104605587	A0A1U7Z035	A0A1U8AQZ5	Protein STABILIZED1.	Zinc finger protein ZOP1.	0.934
LOC104589782	LOC104595051	A0A1U7Z322	A0A1U8Q242	Helicase-like transcription factor CHR28 isoform X1.	Uncharacterized protein LOC104595051 isoform X1.	0.556
LOC104589782	LOC104601279	A0A1U7Z322	A0A1U8A6K2	Helicase-like transcription factor CHR28 isoform X1.	Helicase protein MOM1-like isoform X1.	0.550
LOC104591500	LOC104587716	A0A1U7Z5T9	A0A1U7Z9E7	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	Protein RRP6-like 2.	0.560
LOC104591500	LOC104600986	A0A1U7Z5T9	A0A1U8AIZ4	Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.	Histone-lysine N-methyltransferase family member SUVH9-like.	0.506