(10 nodes) Cytochrome complex network (Coccidioides posadasii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CPSG_00594	Cytochrome c oxidase polypeptide VI. (164 aa)
	CPSG_00800	Cytochrome c oxidase subunit V. (194 aa)
	CPSG_02105	Uncharacterized protein. (64 aa)
	CPSG_02856	Ubiquinol-cytochrome C reductase complex subunit UcrQ. (99 aa)
	CPSG_03106	Uncharacterized protein. (78 aa)
	CPSG_05157	Cytochrome c oxidase subunit 6A, mitochondrial. (135 aa)
	CPSG_05718	Cytochrome c oxidase subunit 7A; This small integral protein plays a role in holoenzyme assembly or stability. (61 aa)
	CPSG_07571	Uncharacterized protein. (112 aa)
	CPSG_08635	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. (92 aa)
	CPSG_10081	Cytochrome C1. (249 aa)

Your Current Organism:

Coccidioides posadasii

NCBI taxonomy Id: 443226
Other names: C. posadasii str. Silveira, Coccidioides posadasii str. Silveira

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPSG_00594	CPSG_00800	E9CSN5	E9CT91	Cytochrome c oxidase polypeptide VI.	Cytochrome c oxidase subunit V.	0.999
CPSG_00594	CPSG_02105	E9CSN5	E9CXC2	Cytochrome c oxidase polypeptide VI.	Uncharacterized protein.	0.998
CPSG_00594	CPSG_02856	E9CSN5	E9CYI6	Cytochrome c oxidase polypeptide VI.	Ubiquinol-cytochrome C reductase complex subunit UcrQ.	0.999
CPSG_00594	CPSG_03106	E9CSN5	E9D0S7	Cytochrome c oxidase polypeptide VI.	Uncharacterized protein.	0.999
CPSG_00594	CPSG_05157	E9CSN5	E9D4N9	Cytochrome c oxidase polypeptide VI.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.999
CPSG_00594	CPSG_07571	E9CSN5	E9DCL9	Cytochrome c oxidase polypeptide VI.	Uncharacterized protein.	0.940
CPSG_00594	CPSG_08635	E9CSN5	E9DF79	Cytochrome c oxidase polypeptide VI.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.999
CPSG_00594	CPSG_10081	E9CSN5	E9DJT2	Cytochrome c oxidase polypeptide VI.	Cytochrome C1.	0.999
CPSG_00800	CPSG_00594	E9CT91	E9CSN5	Cytochrome c oxidase subunit V.	Cytochrome c oxidase polypeptide VI.	0.999
CPSG_00800	CPSG_02105	E9CT91	E9CXC2	Cytochrome c oxidase subunit V.	Uncharacterized protein.	0.996
CPSG_00800	CPSG_02856	E9CT91	E9CYI6	Cytochrome c oxidase subunit V.	Ubiquinol-cytochrome C reductase complex subunit UcrQ.	0.999
CPSG_00800	CPSG_03106	E9CT91	E9D0S7	Cytochrome c oxidase subunit V.	Uncharacterized protein.	0.999
CPSG_00800	CPSG_05157	E9CT91	E9D4N9	Cytochrome c oxidase subunit V.	Cytochrome c oxidase subunit 6A, mitochondrial.	0.999
CPSG_00800	CPSG_05718	E9CT91	E9D7B6	Cytochrome c oxidase subunit V.	Cytochrome c oxidase subunit 7A; This small integral protein plays a role in holoenzyme assembly or stability.	0.775
CPSG_00800	CPSG_07571	E9CT91	E9DCL9	Cytochrome c oxidase subunit V.	Uncharacterized protein.	0.867
CPSG_00800	CPSG_08635	E9CT91	E9DF79	Cytochrome c oxidase subunit V.	Cytochrome c oxidase subunit; This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.	0.994
CPSG_00800	CPSG_10081	E9CT91	E9DJT2	Cytochrome c oxidase subunit V.	Cytochrome C1.	0.999
CPSG_02105	CPSG_00594	E9CXC2	E9CSN5	Uncharacterized protein.	Cytochrome c oxidase polypeptide VI.	0.998
CPSG_02105	CPSG_00800	E9CXC2	E9CT91	Uncharacterized protein.	Cytochrome c oxidase subunit V.	0.996
CPSG_02105	CPSG_02856	E9CXC2	E9CYI6	Uncharacterized protein.	Ubiquinol-cytochrome C reductase complex subunit UcrQ.	0.999