(8 nodes) Mixed, incl. Transcription cis-regulatory region binding, and Protein of unknown function DUF2993 network (Streptomyces sp. CNQ509)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKH86741.1	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AKH83095.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
	AKH83096.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AKH83097.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	AKH86743.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (612 aa)
	AKH83098.1	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa)
	AKH83100.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)
	AKH83101.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)

Your Current Organism:

Streptomyces sp. CNQ509

NCBI taxonomy Id: 444103
Other names: S. sp. CNQ-509, Streptomyces sp. CNQ-509

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKH83095.1	AKH83096.1	AA958_13600	AA958_13605	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AKH83095.1	AKH83097.1	AA958_13600	AA958_13610	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AKH83095.1	AKH83100.1	AA958_13600	AA958_13630	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AKH83095.1	AKH86741.1	AA958_13600	AA958_13580	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AKH83096.1	AKH83095.1	AA958_13605	AA958_13600	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.815
AKH83096.1	AKH83097.1	AA958_13605	AA958_13610	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
AKH83096.1	AKH83100.1	AA958_13605	AA958_13630	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
AKH83096.1	AKH86741.1	AA958_13605	AA958_13580	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AKH83097.1	AKH83095.1	AA958_13610	AA958_13600	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
AKH83097.1	AKH83096.1	AA958_13610	AA958_13605	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
AKH83097.1	AKH83100.1	AA958_13610	AA958_13630	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
AKH83097.1	AKH86741.1	AA958_13610	AA958_13580	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
AKH83098.1	AKH83100.1	AA958_13620	AA958_13630	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
AKH83098.1	AKH83101.1	AA958_13620	AA958_13635	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
AKH83098.1	AKH86743.1	AA958_13620	AA958_13615	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
AKH83100.1	AKH83095.1	AA958_13630	AA958_13600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AKH83100.1	AKH83096.1	AA958_13630	AA958_13605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
AKH83100.1	AKH83097.1	AA958_13630	AA958_13610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
AKH83100.1	AKH83098.1	AA958_13630	AA958_13620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.807
AKH83100.1	AKH83101.1	AA958_13630	AA958_13635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544