(17 nodes) Mixed, incl. Mtb iron assimilation by chelation, and ABC-2 family transporter protein network (Streptomyces sp. CNQ509)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKH81841.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AKH81842.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	AKH81880.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	AKH83422.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
	AKH83423.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
	AKH83424.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AKH84916.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	AKH84917.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	AKH84918.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	AKH84919.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	AKH84967.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)
	AKH84968.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (658 aa)
	AKH85925.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)
	AKH85926.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (78 aa)
	AKH85992.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)
	AKH86057.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (712 aa)
	AKH86199.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (800 aa)

Your Current Organism:

Streptomyces sp. CNQ509

NCBI taxonomy Id: 444103
Other names: S. sp. CNQ-509, Streptomyces sp. CNQ-509

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKH81841.1	AKH81842.1	AA958_06060	AA958_06065	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AKH81841.1	AKH83422.1	AA958_06060	AA958_15760	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
AKH81841.1	AKH84916.1	AA958_06060	AA958_24960	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AKH81841.1	AKH84918.1	AA958_06060	AA958_24970	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AKH81842.1	AKH81841.1	AA958_06065	AA958_06060	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.948
AKH81842.1	AKH83424.1	AA958_06065	AA958_15770	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
AKH81842.1	AKH84917.1	AA958_06065	AA958_24965	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
AKH81842.1	AKH84919.1	AA958_06065	AA958_24975	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AKH81880.1	AKH86199.1	AA958_06280	AA958_32750	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
AKH83422.1	AKH81841.1	AA958_15760	AA958_06060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
AKH83422.1	AKH83423.1	AA958_15760	AA958_15765	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AKH83422.1	AKH83424.1	AA958_15760	AA958_15770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AKH83422.1	AKH84917.1	AA958_15760	AA958_24965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AKH83422.1	AKH84919.1	AA958_15760	AA958_24975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
AKH83423.1	AKH83422.1	AA958_15765	AA958_15760	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
AKH83423.1	AKH83424.1	AA958_15765	AA958_15770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
AKH83424.1	AKH81842.1	AA958_15770	AA958_06065	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
AKH83424.1	AKH83422.1	AA958_15770	AA958_15760	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AKH83424.1	AKH83423.1	AA958_15770	AA958_15765	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
AKH83424.1	AKH84916.1	AA958_15770	AA958_24960	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.599