(10 nodes) Condensation domain network (Streptomyces sp. CNQ509)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKH85663.1	CDA peptide synthetase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (3102 aa)
	AKH86058.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3237 aa)
	AKH86059.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1544 aa)
	AKH86060.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1533 aa)
	AKH86061.1	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (4611 aa)
	AKH86062.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2181 aa)
	AKH81532.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2360 aa)
	AKH86198.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2548 aa)
	AKH82886.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (500 aa)
	AKH85660.1	Tyrocidine synthase 3; Derived by automated computational analysis using gene prediction method: Protein Homology. (1110 aa)

Your Current Organism:

Streptomyces sp. CNQ509

NCBI taxonomy Id: 444103
Other names: S. sp. CNQ-509, Streptomyces sp. CNQ-509

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKH81532.1	AKH82886.1	AA958_04245	AA958_12305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.988
AKH81532.1	AKH85660.1	AA958_04245	AA958_29300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrocidine synthase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
AKH81532.1	AKH86059.1	AA958_04245	AA958_31910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
AKH81532.1	AKH86060.1	AA958_04245	AA958_31915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
AKH81532.1	AKH86061.1	AA958_04245	AA958_31920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
AKH81532.1	AKH86062.1	AA958_04245	AA958_31925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.454
AKH81532.1	AKH86198.1	AA958_04245	AA958_32745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
AKH82886.1	AKH81532.1	AA958_12305	AA958_04245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AKH82886.1	AKH85660.1	AA958_12305	AA958_29300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Tyrocidine synthase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH82886.1	AKH85663.1	AA958_12305	AA958_29325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	CDA peptide synthetase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AKH82886.1	AKH86058.1	AA958_12305	AA958_31905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AKH82886.1	AKH86059.1	AA958_12305	AA958_31910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH82886.1	AKH86060.1	AA958_12305	AA958_31915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH82886.1	AKH86061.1	AA958_12305	AA958_31920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH82886.1	AKH86062.1	AA958_12305	AA958_31925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH82886.1	AKH86198.1	AA958_12305	AA958_32745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH85660.1	AKH81532.1	AA958_29300	AA958_04245	Tyrocidine synthase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
AKH85660.1	AKH82886.1	AA958_29300	AA958_12305	Tyrocidine synthase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
AKH85660.1	AKH85663.1	AA958_29300	AA958_29325	Tyrocidine synthase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDA peptide synthetase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
AKH85660.1	AKH86058.1	AA958_29300	AA958_31905	Tyrocidine synthase 3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838