(20 nodes) Phosphopantetheine attachment site network (Streptomyces sp. CNQ509)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKH86058.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3237 aa)
	AKH86060.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1533 aa)
	AKH86061.1	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (4611 aa)
	AKH86198.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2548 aa)
	AKH80917.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (4949 aa)
	AKH80922.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1661 aa)
	AKH80923.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3406 aa)
	AKH80924.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (5676 aa)
	AKH80925.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (5986 aa)
	AKH80933.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1500 aa)
	AKH80934.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2463 aa)
	AKH81531.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
	AKH81532.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2360 aa)
	AKH86775.1	Tetracenomycin C polyketide synthase acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (62 aa)
	AKH86933.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2096 aa)
	AKH85658.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2901 aa)
	AKH85659.1	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1102 aa)
	AKH87109.1	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1883 aa)
	AKH85663.1	CDA peptide synthetase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (3102 aa)
	AKH86059.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1544 aa)

Your Current Organism:

Streptomyces sp. CNQ509

NCBI taxonomy Id: 444103
Other names: S. sp. CNQ-509, Streptomyces sp. CNQ-509

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKH80917.1	AKH80922.1	AA958_00630	AA958_00665	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AKH80917.1	AKH80923.1	AA958_00630	AA958_00670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AKH80917.1	AKH80924.1	AA958_00630	AA958_00675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AKH80917.1	AKH80925.1	AA958_00630	AA958_00680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH80917.1	AKH80933.1	AA958_00630	AA958_00720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AKH80917.1	AKH80934.1	AA958_00630	AA958_00725	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH80917.1	AKH81531.1	AA958_00630	AA958_04240	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AKH80917.1	AKH81532.1	AA958_00630	AA958_04245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
AKH80917.1	AKH85658.1	AA958_00630	AA958_29290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH80917.1	AKH85659.1	AA958_00630	AA958_29295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
AKH80917.1	AKH85663.1	AA958_00630	AA958_29325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CDA peptide synthetase I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.897
AKH80917.1	AKH86058.1	AA958_00630	AA958_31905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
AKH80917.1	AKH86059.1	AA958_00630	AA958_31910	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH80917.1	AKH86060.1	AA958_00630	AA958_31915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH80917.1	AKH86061.1	AA958_00630	AA958_31920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKH80917.1	AKH86198.1	AA958_00630	AA958_32745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AKH80917.1	AKH86933.1	AA958_00630	AA958_20925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
AKH80917.1	AKH87109.1	AA958_00630	AA958_29305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
AKH80922.1	AKH80917.1	AA958_00665	AA958_00630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
AKH80922.1	AKH80923.1	AA958_00665	AA958_00670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969