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| | ALE80061.1 | Metallophosphoesterase. (316 aa) |
| | recR | Recombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (205 aa) |
| | ALE80023.1 | Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (104 aa) |
| | ALE79978.1 | Hypothetical protein. (152 aa) |
| | ALE79878.1 | Hypothetical protein. (356 aa) |
| | ALE79848.1 | N-acetylneuraminate synthase. (352 aa) |
| | ALE79821.1 | Hypothetical protein. (257 aa) |
| | ALE79798.1 | RNA methyltransferase. (113 aa) |
| | ALE79794.1 | Uridine kinase. (208 aa) |
| | gyrB | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (688 aa) |
| | recF | Recombinase RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (395 aa) |
| | rpmH | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (45 aa) |
| | ALE79748.1 | Chromosome partitioning protein. (297 aa) |
| | ALE79747.1 | Chromosome partitioning protein ParB; Belongs to the ParB family. (323 aa) |
| | ALE79724.1 | Short-chain dehydrogenase. (245 aa) |
| | rpsF | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (104 aa) |
| | rpsR-2 | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (78 aa) |
| | ALE79711.1 | Helicase DnaB; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (469 aa) |
| | ALE79703.1 | Nitric oxide synthase oxygenase; Catalyzes the production of nitric oxide. Belongs to the NOS family. Bacterial NOS oxygenase subfamily. (355 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (254 aa) |
| | ALE79570.1 | Hypothetical protein. (306 aa) |
| | ALE79528.1 | Hypothetical protein. (210 aa) |
| | ALE79514.1 | Hypothetical protein. (218 aa) |
| | ALE79430.1 | NAD-dependent protein deacetylase. (285 aa) |
| | ALE79383.1 | FMN-binding protein. (152 aa) |
| | ALE79354.1 | Carbonic anhydrase. (173 aa) |
| | ALE79327.1 | ATPase. (791 aa) |
| | ALE79309.1 | ATPase. (424 aa) |
| | ALE79292.1 | ATPase AAA. (372 aa) |
| | ALE79213.1 | Cytochrome C assembly protein. (317 aa) |
| | nuoN | NADH:ubiquinone oxidoreductase subunit N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (537 aa) |
| | ALE79174.1 | Hypothetical protein. (281 aa) |
| | ALE79161.1 | Hypothetical protein. (1014 aa) |
| | rpmF | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (59 aa) |
| | rpmG-2 | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (55 aa) |
| | rpsR | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (80 aa) |
| | rpmB | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | rpsN-2 | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | rpmG | 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (55 aa) |
| | rplJ | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (188 aa) |
| | rplL | 50S ribosomal protein L7; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (129 aa) |
| | rpsG | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsJ | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (101 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (228 aa) |
| | rplW | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (99 aa) |
| | rplB | 50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa) |
| | rpsC | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (281 aa) |
| | rpmC | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (81 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (91 aa) |
| | rplN | 50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplX | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (108 aa) |
| | rplE | 50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (187 aa) |
| | rpsN | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa) |
| | rpsH | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplR | 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (137 aa) |
| | rpsE | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (211 aa) |
| | rpmD | 50S ribosomal protein L30. (61 aa) |
| | rpmJ | 50S ribosomal protein L36; Smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif. (37 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (107 aa) |
| | rplQ | 50S ribosomal protein L17. (222 aa) |
| | rplM | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (147 aa) |
| | rpsI | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (131 aa) |
| | hpf | 30S ribosomal protein S30; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (219 aa) |
| | ALE78921.1 | Hypothetical protein; Belongs to the SOS response-associated peptidase family. (272 aa) |
| | ALE78904.1 | ABC transporter permease. (239 aa) |
| | rpmE | 50S ribosomal protein L31; Binds the 23S rRNA. (73 aa) |
| | ALE78840.1 | Hypothetical protein. (258 aa) |
| | ALE78791.1 | FAD-dependent oxidoreductase. (470 aa) |
| | ALE78734.1 | Hypothetical protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (166 aa) |
| | ALE78685.1 | Hypothetical protein. (159 aa) |
| | ALE78674.1 | Sugar-binding protein. (439 aa) |
| | ALE78646.1 | Cell division protein FtsK. (295 aa) |
| | ALE78608.1 | Amine oxidase. (438 aa) |
| | ALE78558.1 | Ethanolamine ammonia-lyase; Belongs to the EutC family. (245 aa) |
| | ALE78482.1 | DNA repair ATPase. (493 aa) |
| | kynU | Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (418 aa) |
| | ALE78335.1 | Dehydrogenase. (535 aa) |
| | ALE78306.1 | Hypothetical protein. (60 aa) |
| | ALE78166.1 | Hypothetical protein. (594 aa) |
| | ALE78062.1 | Glycerol dehydrogenase. (141 aa) |
| | pduC | Propanediol dehydratase; With pduED catalyzes the formation of propionaldehyde from 1,2-propanediol. (573 aa) |
| | ALE78060.1 | Propanediol utilization protein. (191 aa) |
| | ALE78058.1 | Hypothetical protein. (142 aa) |
| | ALE78051.1 | Hypothetical protein. (421 aa) |
| | rpmE2 | 50S ribosomal protein L31. (84 aa) |
| | ALE78014.1 | Oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (248 aa) |
| | ALE77931.1 | Anhydrase. (169 aa) |
| | pdxS | Pyridoxal biosynthesis lyase PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (305 aa) |
| | ALE77789.1 | Lipopolysaccharide kinase. (424 aa) |
| | ALE77756.1 | ATPase AAA. (456 aa) |
| | priA | Primosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (669 aa) |
| | ALE77703.1 | Hypothetical protein. (255 aa) |
| | ALE77618.1 | Transcriptional regulator. (69 aa) |
| | ALE77488.1 | RNA helicase. (968 aa) |
| | ALE77431.1 | ATP-dependent DNA helicase RecQ. (618 aa) |
| | ALE77403.1 | Methyltransferase. (252 aa) |
| | ALE77294.1 | Iron ABC transporter substrate-binding protein. (347 aa) |
| | ALE77220.1 | Ribulose 5-phosphate epimerase. (228 aa) |
| | ALE77208.1 | Hypothetical protein. (76 aa) |
| | ALE77151.1 | Hypothetical protein. (954 aa) |
| | ALE77145.1 | Chorismate mutase. (120 aa) |
| | ALE80962.1 | Iron-sulfur protein. (133 aa) |
| | rpsB | 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (287 aa) |
| | ALE81010.1 | Hypothetical protein. (332 aa) |
| | rpsP | 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (167 aa) |
| | rpmF-2 | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (60 aa) |
| | rpmB-2 | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (63 aa) |
| | ALE80903.1 | Carbonic anhydrase. (174 aa) |
| | ALE80879.1 | Hypothetical protein. (289 aa) |
| | ALE80863.1 | Bacteriocin. (271 aa) |
| | ALE80656.1 | ADP-ribosylglycohydrolase. (333 aa) |
| | ALE80618.1 | Enoyl reductase. (419 aa) |
| | ALE80585.1 | Hypothetical protein. (291 aa) |
| | ALE80471.1 | Hypothetical protein. (274 aa) |
| | ALE80410.1 | Cell division protein FtsK. (367 aa) |
| | rplY | 50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (232 aa) |
| | ALE80250.1 | Hypothetical protein. (185 aa) |
| | ALE80199.1 | Hypothetical protein. (245 aa) |
| | rplT | 50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (127 aa) |
| | rpmI | 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (64 aa) |
| | rpsA | 30S ribosomal protein S1; In Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins. (496 aa) |
| | ALE81620.1 | DNA topoisomerase. (339 aa) |
| | ALE81573.1 | Fe-S cluster assembly protein HesB. (196 aa) |
| | ALE81571.1 | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. (153 aa) |
| | ALE81567.1 | Poly-beta-hydroxybutyrate polymerase. (560 aa) |
| | ALE81464.1 | Peptidase. (223 aa) |
| | ALE81452.1 | Hypothetical protein. (225 aa) |
| | ALE81244.1 | Hypothetical protein. (166 aa) |
| | ALE81236.1 | Hypothetical protein. (170 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (622 aa) |
| | cobB-2 | NAD-dependent deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily. (281 aa) |
| | rpsT | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (87 aa) |
| | ALE81151.1 | ATPase. (297 aa) |
| | rplU | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (101 aa) |
| | ALE81048.1 | Gas vesicle protein GvpK. (99 aa) |
| | ALE81047.1 | Hypothetical protein. (69 aa) |
| | ALE81046.1 | Hypothetical protein. (247 aa) |
| | gvpA | Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure. (129 aa) |
| | rpsO | 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | ALE80130.1 | Dksa/trar family transcriptional regulator. (117 aa) |
| | ALE80113.1 | Hypothetical protein. (66 aa) |
| | ALE80070.1 | ATPase. (385 aa) |
| | ALE80069.1 | Hypothetical protein. (162 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (978 aa) |
