STRINGSTRING
Cfla_1920 Cfla_1920 mshC mshC Cfla_1516 Cfla_1516 Cfla_0079 Cfla_0079 Cfla_0239 Cfla_0239 Cfla_3680 Cfla_3680 Cfla_3679 Cfla_3679 Cfla_3624 Cfla_3624 nadE-2 nadE-2 guaA guaA coaD coaD nadD nadD leuS leuS Cfla_2058 Cfla_2058 tilS tilS panC panC cysS cysS Cfla_0776 Cfla_0776 metG metG Cfla_0886 Cfla_0886 trpS trpS argS argS Cfla_1102 Cfla_1102 Cfla_1103 Cfla_1103 mnmA mnmA Cfla_1122 Cfla_1122 gltX gltX Cfla_1242 Cfla_1242 valS valS Cfla_1443 Cfla_1443 ileS ileS argG argG tyrS tyrS Cfla_1732 Cfla_1732 cysD cysD Cfla_1737 Cfla_1737 nadE nadE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Cfla_1920PFAM: UspA domain protein; KEGG: mul:MUL_5033 hypothetical protein. (292 aa)
mshCcysteine/1-D-myo-inosityl 2-amino-2-deoxy-alpha- D-glucopyranoside ligase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily. (415 aa)
Cfla_1516KEGG: bcv:Bcav_2486 riboflavin biosynthesis protein RibF; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; Belongs to the ribF family. (336 aa)
Cfla_0079PFAM: Methyltransferase type 12; KEGG: lbf:LBF_0345 hypothetical protein. (524 aa)
Cfla_0239PFAM: UspA domain protein; KEGG: lxx:Lxx00710 hypothetical protein. (179 aa)
Cfla_3680KEGG: kra:Krad_0658 electron transfer flavoprotein alpha subunit; PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; SMART: Electron transfer flavoprotein alpha/beta- subunit. (330 aa)
Cfla_3679PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: jde:Jden_1725 electron transfer flavoprotein alpha/beta-subunit. (262 aa)
Cfla_3624KEGG: ami:Amir_2662 methionine--tRNA ligase; PFAM: tRNA synthetase class I (M); Belongs to the class-I aminoacyl-tRNA synthetase family. (513 aa)
nadE-2NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (621 aa)
guaAGMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. (533 aa)
coaDPantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (170 aa)
nadDNicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (205 aa)
leuSKEGG: jde:Jden_1568 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (982 aa)
Cfla_2058PFAM: UspA domain protein; KEGG: bcv:Bcav_1913 UspA domain protein. (130 aa)
tilStRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (386 aa)
panCPantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (324 aa)
cysSTIGRFAM: cysteinyl-tRNA synthetase; KEGG: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Cysteinyl-tRNA synthetase class Ia DALR; Belongs to the class-I aminoacyl-tRNA synthetase family. (481 aa)
Cfla_0776PFAM: UspA domain protein; KEGG: UspA domain protein. (308 aa)
metGmethionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (595 aa)
Cfla_0886KEGG: bcv:Bcav_0992 cytidyltransferase-related protein domain protein; TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase. (147 aa)
trpStryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (351 aa)
argSTIGRFAM: arginyl-tRNA synthetase; KEGG: arginyl-tRNA synthetase. (560 aa)
Cfla_1102PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: kra:Krad_0657 electron transfer flavoprotein alpha/beta-subunit. (264 aa)
Cfla_1103PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: kra:Krad_0658 electron transfer flavoprotein alpha subunit. (326 aa)
mnmAtRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (372 aa)
Cfla_1122KEGG: kra:Krad_3554 deoxyribodipyrimidine photo- lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein. (457 aa)
gltXglutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (503 aa)
Cfla_1242PFAM: UspA domain protein; KEGG: svi:Svir_22880 universal stress protein UspA- like protein. (294 aa)
valStRNA synthetase valyl/leucyl anticodon-binding protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner. (886 aa)
Cfla_1443KEGG: sgr:SGR_5731 putative NadR-like transcriptional regulator. (350 aa)
ileSisoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1072 aa)
argGTIGRFAM: argininosuccinate synthase; KEGG: jde:Jden_1117 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (412 aa)
tyrStyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (427 aa)
Cfla_1732KEGG: bcv:Bcav_1967 hypothetical protein. (161 aa)
cysDKEGG: ace:Acel_1618 sulfate adenylyltransferase subunit 2; TIGRFAM: sulfate adenylyltransferase, small subunit; PFAM: phosphoadenosine phosphosulfate reductase. (317 aa)
Cfla_1737Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. Belongs to the PAPS reductase family. CysH subfamily. (239 aa)
nadENAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (686 aa)
Your Current Organism:
Cellulomonas flavigena
NCBI taxonomy Id: 446466
Other names: C. flavigena DSM 20109, Cellulomonas flavigena DSM 20109, Cellulomonas flavigena str. DSM 20109, Cellulomonas flavigena strain DSM 20109
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