STRINGSTRING
Ndas_0582 Ndas_0582 Ndas_0716 Ndas_0716 Ndas_0830 Ndas_0830 Ndas_0914 Ndas_0914 Ndas_1192 Ndas_1192 Ndas_1193 Ndas_1193 Ndas_1194 Ndas_1194 Ndas_1195 Ndas_1195 Ndas_1243 Ndas_1243 Ndas_1658 Ndas_1658 Ndas_1659 Ndas_1659 Ndas_1660 Ndas_1660 Ndas_1666 Ndas_1666 Ndas_1673 Ndas_1673 Ndas_1674 Ndas_1674 Ndas_1675 Ndas_1675 Ndas_1798 Ndas_1798 Ndas_1853 Ndas_1853 Ndas_2073 Ndas_2073 Ndas_2214 Ndas_2214 Ndas_2500 Ndas_2500 Ndas_2544 Ndas_2544 Ndas_2545 Ndas_2545 Ndas_2605 Ndas_2605 Ndas_2790 Ndas_2790 Ndas_3536 Ndas_3536 Ndas_3924 Ndas_3924 Ndas_4229 Ndas_4229 Ndas_5195 Ndas_5195 Ndas_5227 Ndas_5227 Ndas_5404 Ndas_5404
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Ndas_0582Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: tfu:Tfu_2254 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YLG9 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (312 aa)
Ndas_0716Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sco:SCO2644 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YNE3 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (308 aa)
Ndas_0830Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sen:SACE_4609 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YQR9 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (313 aa)
Ndas_0914Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sro:Sros_4400 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YQI3 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; TIGRFAM: ModE molybdate transport repressor domain. (301 aa)
Ndas_1192COGs: COG2610 H+/gluconate symporter and related permease; InterPro IPR003474; KEGG: rop:ROP_49970 gluconate permease; PFAM: Gluconate transporter; SPTR: C1YTK7 H+/gluconate symporter family protein; PFAM: GntP family permease. (476 aa)
Ndas_1193L-carnitine dehydratase/bile acid-inducible protein F; COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: sco:SCO3130 dehydratase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: C1YTK6 Predicted acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family. (391 aa)
Ndas_1194HpcH/HpaI aldolase; COGs: COG2301 Citrate lyase beta subunit; InterPro IPR015813:IPR005000:IPR011206; KEGG: rme:Rmet_3835 HpcH/HpaI aldolase; PFAM: HpcH/HpaI aldolase; SPTR: C1YTK5 Citrate lyase beta subunit; PFAM: HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family. (289 aa)
Ndas_1195Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: bam:Bamb_6272 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YTK4 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (339 aa)
Ndas_1243Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sco:SCO3773 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YU94 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (307 aa)
Ndas_1658COGs: COG3173 aminoglycoside phosphotransferase; InterPro IPR011009:IPR002575; KEGG: xce:Xcel_2821 aminoglycoside phosphotransferase; PFAM: aminoglycoside phosphotransferase; SPTR: C1YJI1 Predicted aminoglycoside phosphotransferase; PFAM: Phosphotransferase enzyme family. (299 aa)
Ndas_1659Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sco:SCO0262 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YJI0 Transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain. (313 aa)
Ndas_1660COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); InterPro IPR011004:IPR018357:IPR001451; KEGG: sco:SCO0261 acetyltransferase; SPTR: C1YJH9 Acetyltransferase (Isoleucine patch superfamily). (175 aa)
Ndas_1666Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: mjl:Mjls_2639 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YJH3 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (302 aa)
Ndas_1673Major facilitator superfamily MFS_1; COGs: COG2814 Arabinose efflux permease; InterPro IPR016196:IPR011701; KEGG: sen:SACE_5709 integral membrane transport protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1YJ33 Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily. (402 aa)
Ndas_1674Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: rer:RER_58130 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YJ32 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (297 aa)
Ndas_1675Protein of unknown function DUF427; COGs: COG2343 conserved hypothetical protein; InterPro IPR007361; KEGG: msm:MSMEG_6469 hypothetical protein; PFAM: protein of unknown function DUF427; SPTR: C1YJH1 Uncharacterized conserved protein; PFAM: Domain of unknown function (DUF427). (124 aa)
Ndas_1798Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: ach:Achl_0443 transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YNT3 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (318 aa)
Ndas_1853Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR011991:IPR000847:IPR005119; KEGG: tfu:Tfu_1740 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YWL9 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (350 aa)
Ndas_2073Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sen:SACE_3695 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YMV4 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (285 aa)
Ndas_2214Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sma:SAV_3360 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YTX8 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (331 aa)
Ndas_2500Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: ach:Achl_0352 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YM30 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (297 aa)
Ndas_2544Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: tfu:Tfu_1423 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YTA4 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (300 aa)
Ndas_2545Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: tfu:Tfu_1422 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YTA3 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (309 aa)
Ndas_2605L-carnitine dehydratase/bile acid-inducible protein F; COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: sro:Sros_0566 formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: C1YT46 Predicted acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family. (400 aa)
Ndas_2790Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sro:Sros_2019 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YK58 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (330 aa)
Ndas_3536Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sma:SAV_4773 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YVY0 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (318 aa)
Ndas_3924Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: tfu:Tfu_2454 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YKS7 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (316 aa)
Ndas_4229Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR011991:IPR000847:IPR005119; KEGG: sen:SACE_5710 putative transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YFZ7 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (305 aa)
Ndas_5195COGs: COG2301 Citrate lyase beta subunit; InterPro IPR015813:IPR005000:IPR011206; KEGG: tfu:Tfu_0341 citryl-CoA lyase; PFAM: HpcH/HpaI aldolase; PRIAM: Citrate (pro-3S)-lyase; SPTR: C1YI25 Citrate lyase beta subunit; PFAM: HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family. (315 aa)
Ndas_5227L-carnitine dehydratase/bile acid-inducible protein F; COGs: COG1804 acyl-CoA transferase/carnitine dehydratase; InterPro IPR003673; KEGG: tfu:Tfu_0399 putative fatty acid-CoA racemase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; SPTR: C1YIN9 Predicted acyl-CoA transferase/carnitine dehydratase; PFAM: CoA-transferase family III; Belongs to the CoA-transferase III family. (364 aa)
Ndas_5404Class II aldolase/adducin family protein; COGs: COG0235 Ribulose-5-phosphate 4-epimerase and related epimerase and aldolase; InterPro IPR001303; KEGG: tcu:Tcur_1876 class II aldolase/adducin family protein; PFAM: class II aldolase/adducin family protein; SPTR: C1YUE2 Ribulose-5-phosphate 4-epimerase-like epimerase or aldolase; PFAM: Class II Aldolase and Adducin N-terminal domain. (220 aa)
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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