STRINGSTRING
Ndas_0516 Ndas_0516 Ndas_0476 Ndas_0476 Ndas_0475 Ndas_0475 Ndas_0456 Ndas_0456 Ndas_0421 Ndas_0421 Ndas_0395 Ndas_0395 Ndas_0362 Ndas_0362 Ndas_0299 Ndas_0299 Ndas_0184 Ndas_0184 Ndas_0124 Ndas_0124 Ndas_0100 Ndas_0100 Ndas_0088 Ndas_0088 Ndas_0087 Ndas_0087 Ndas_0056 Ndas_0056 Ndas_0050 Ndas_0050 Ndas_0045 Ndas_0045 Ndas_0032 Ndas_0032 Ndas_0030 Ndas_0030 Ndas_1101 Ndas_1101 ADH69117.1 ADH69117.1 Ndas_5569 Ndas_5569 Ndas_5568 Ndas_5568 Ndas_5497 Ndas_5497 Ndas_5463 Ndas_5463 Ndas_5415 Ndas_5415 Ndas_5390 Ndas_5390 Ndas_5374 Ndas_5374 Ndas_5362 Ndas_5362 Ndas_5315 Ndas_5315 Ndas_5314 Ndas_5314 Ndas_5300 Ndas_5300 Ndas_5286 Ndas_5286 Ndas_5205 Ndas_5205 Ndas_5196 Ndas_5196 Ndas_5191 Ndas_5191 Ndas_5082 Ndas_5082 Ndas_5078 Ndas_5078 Ndas_5036 Ndas_5036 Ndas_5019 Ndas_5019 Ndas_4988 Ndas_4988 Ndas_4944 Ndas_4944 Ndas_4905 Ndas_4905 Ndas_4895 Ndas_4895 Ndas_4882 Ndas_4882 Ndas_4855 Ndas_4855 Ndas_4825 Ndas_4825 Ndas_4824 Ndas_4824 Ndas_4811 Ndas_4811 Ndas_4803 Ndas_4803 Ndas_4793 Ndas_4793 Ndas_4784 Ndas_4784 Ndas_4772 Ndas_4772 Ndas_4755 Ndas_4755 Ndas_4743 Ndas_4743 Ndas_4670 Ndas_4670 Ndas_4661 Ndas_4661 Ndas_4647 Ndas_4647 Ndas_4646 Ndas_4646 Ndas_4612 Ndas_4612 Ndas_4595 Ndas_4595 Ndas_4549 Ndas_4549 Ndas_4547 Ndas_4547 Ndas_4521 Ndas_4521 Ndas_4514 Ndas_4514 Ndas_4498 Ndas_4498 Ndas_4493 Ndas_4493 Ndas_4472 Ndas_4472 Ndas_4465 Ndas_4465 Ndas_4438 Ndas_4438 Ndas_4376 Ndas_4376 rex rex Ndas_4332 Ndas_4332 Ndas_4322 Ndas_4322 Ndas_4301 Ndas_4301 Ndas_4294 Ndas_4294 Ndas_4291 Ndas_4291 Ndas_4229 Ndas_4229 Ndas_4202 Ndas_4202 Ndas_4167 Ndas_4167 Ndas_4163 Ndas_4163 Ndas_4108 Ndas_4108 Ndas_4053 Ndas_4053 Ndas_4038 Ndas_4038 Ndas_4031 Ndas_4031 Ndas_4024 Ndas_4024 Ndas_3997 Ndas_3997 Ndas_3993 Ndas_3993 Ndas_3962 Ndas_3962 Ndas_3924 Ndas_3924 Ndas_3891 Ndas_3891 Ndas_3861 Ndas_3861 Ndas_3846 Ndas_3846 Ndas_3823 Ndas_3823 Ndas_3820 Ndas_3820 Ndas_3809 Ndas_3809 Ndas_3785 Ndas_3785 Ndas_3745 Ndas_3745 Ndas_3737 Ndas_3737 Ndas_3733 Ndas_3733 Ndas_3701 Ndas_3701 Ndas_3697 Ndas_3697 Ndas_3692 Ndas_3692 Ndas_3684 Ndas_3684 Ndas_3680 Ndas_3680 Ndas_3664 Ndas_3664 Ndas_3648 Ndas_3648 Ndas_3646 Ndas_3646 Ndas_3641 Ndas_3641 Ndas_3617 Ndas_3617 Ndas_3610 Ndas_3610 Ndas_3609 Ndas_3609 Ndas_3581 Ndas_3581 Ndas_3575 Ndas_3575 Ndas_3560 Ndas_3560 Ndas_3536 Ndas_3536 Ndas_3513 Ndas_3513 Ndas_3479 Ndas_3479 Ndas_3472 Ndas_3472 Ndas_3367 Ndas_3367 Ndas_3347 Ndas_3347 lexA lexA sigA-2 sigA-2 Ndas_3275 Ndas_3275 Ndas_3244 Ndas_3244 Ndas_3222 Ndas_3222 Ndas_3216 Ndas_3216 Ndas_3203 Ndas_3203 Ndas_3199 Ndas_3199 Ndas_3159 Ndas_3159 Ndas_3063 Ndas_3063 argR argR Ndas_3002 Ndas_3002 Ndas_2964 Ndas_2964 Ndas_2926 Ndas_2926 Ndas_2909 Ndas_2909 Ndas_2906 Ndas_2906 Ndas_2898 Ndas_2898 Ndas_2885 Ndas_2885 Ndas_2868 Ndas_2868 Ndas_2855 Ndas_2855 Ndas_2841 Ndas_2841 Ndas_2822 Ndas_2822 Ndas_2790 Ndas_2790 Ndas_2786 Ndas_2786 Ndas_2773 Ndas_2773 Ndas_2764 Ndas_2764 Ndas_2705 Ndas_2705 Ndas_2690 Ndas_2690 Ndas_2689 Ndas_2689 Ndas_2648 Ndas_2648 Ndas_2625 Ndas_2625 Ndas_2607 Ndas_2607 Ndas_2592 Ndas_2592 Ndas_2572 Ndas_2572 Ndas_2569 Ndas_2569 Ndas_2545 Ndas_2545 Ndas_2544 Ndas_2544 Ndas_2542 Ndas_2542 Ndas_2537 Ndas_2537 Ndas_2510 Ndas_2510 Ndas_2500 Ndas_2500 Ndas_2456 Ndas_2456 Ndas_2452 Ndas_2452 Ndas_2432 Ndas_2432 Ndas_2421 Ndas_2421 Ndas_2415 Ndas_2415 Ndas_2412 Ndas_2412 Ndas_2394 Ndas_2394 Ndas_2387 Ndas_2387 Ndas_2384 Ndas_2384 Ndas_2372 Ndas_2372 Ndas_2362 Ndas_2362 Ndas_2335 Ndas_2335 Ndas_2287 Ndas_2287 Ndas_2260 Ndas_2260 Ndas_2214 Ndas_2214 Ndas_2178 Ndas_2178 Ndas_2159 Ndas_2159 Ndas_2155 Ndas_2155 Ndas_2140 Ndas_2140 Ndas_2135 Ndas_2135 Ndas_2122 Ndas_2122 Ndas_2117 Ndas_2117 Ndas_2098 Ndas_2098 Ndas_2081 Ndas_2081 Ndas_2078 Ndas_2078 Ndas_2073 Ndas_2073 Ndas_2064 Ndas_2064 Ndas_2010 Ndas_2010 Ndas_1998 Ndas_1998 Ndas_1988 Ndas_1988 Ndas_1986 Ndas_1986 Ndas_1936 Ndas_1936 Ndas_1916 Ndas_1916 Ndas_1890 Ndas_1890 Ndas_1885 Ndas_1885 Ndas_1865 Ndas_1865 Ndas_1853 Ndas_1853 Ndas_1841 Ndas_1841 Ndas_1830 Ndas_1830 Ndas_1823 Ndas_1823 Ndas_1808 Ndas_1808 Ndas_1806 Ndas_1806 Ndas_1798 Ndas_1798 Ndas_1791 Ndas_1791 Ndas_1786 Ndas_1786 Ndas_1768 Ndas_1768 Ndas_1767 Ndas_1767 Ndas_1738 Ndas_1738 Ndas_1714 Ndas_1714 Ndas_1698 Ndas_1698 Ndas_1694 Ndas_1694 Ndas_1684 Ndas_1684 Ndas_1674 Ndas_1674 Ndas_1666 Ndas_1666 Ndas_1659 Ndas_1659 Ndas_1633 Ndas_1633 Ndas_1631 Ndas_1631 Ndas_1604 Ndas_1604 Ndas_1564 Ndas_1564 Ndas_1514 Ndas_1514 Ndas_1422 Ndas_1422 Ndas_1420 Ndas_1420 Ndas_1408 Ndas_1408 Ndas_1389 Ndas_1389 Ndas_1379 Ndas_1379 Ndas_1372 Ndas_1372 Ndas_1350 Ndas_1350 Ndas_1318 Ndas_1318 Ndas_1302 Ndas_1302 Ndas_1262 Ndas_1262 Ndas_1243 Ndas_1243 Ndas_1195 Ndas_1195 Ndas_1174 Ndas_1174 Ndas_1149 Ndas_1149 Ndas_1145 Ndas_1145 Ndas_1135 Ndas_1135 Ndas_1130 Ndas_1130 Ndas_1079 Ndas_1079 Ndas_1068 Ndas_1068 Ndas_1060 Ndas_1060 Ndas_1024 Ndas_1024 Ndas_1000 Ndas_1000 Ndas_0994 Ndas_0994 Ndas_0975 Ndas_0975 Ndas_0926 Ndas_0926 Ndas_0914 Ndas_0914 Ndas_0873 Ndas_0873 Ndas_0869 Ndas_0869 ruvB ruvB Ndas_0836 Ndas_0836 Ndas_0830 Ndas_0830 Ndas_0789 Ndas_0789 Ndas_0785 Ndas_0785 Ndas_0778 Ndas_0778 sigA sigA Ndas_0742 Ndas_0742 Ndas_0734 Ndas_0734 Ndas_0716 Ndas_0716 Ndas_0712 Ndas_0712 Ndas_0705 Ndas_0705 hrcA hrcA Ndas_0679 Ndas_0679 recX recX Ndas_0663 Ndas_0663 Ndas_0660 Ndas_0660 Ndas_0655 Ndas_0655 Ndas_0648 Ndas_0648 Ndas_0615 Ndas_0615 Ndas_0603 Ndas_0603 Ndas_0590 Ndas_0590 Ndas_0582 Ndas_0582 Ndas_0561 Ndas_0561 Ndas_0553 Ndas_0553 Ndas_0526 Ndas_0526
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
Ndas_0516Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011991; KEGG: tfu:Tfu_0482 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C9Z968 Putative GntR-family regulator; PFAM: Bacterial regulatory proteins, gntR family. (88 aa)
Ndas_0476COGs: COG3629 DNA-binding transcriptional activator of the SARP family; InterPro IPR016032:IPR001867:IPR005158; KEGG: svi:Svir_00460 DNA-binding transcriptional activator of the SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; SPTR: C1YLS5 DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal. (639 aa)
Ndas_0475Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR001347:IPR000281; KEGG: tfu:Tfu_2323 putative transcriptional regulator; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: C1YLS6 Transcriptional regulator, RpiR family; PFAM: SIS domain; Helix-turn-helix domain, rpiR family. (327 aa)
Ndas_0456Transcriptional regulator, MarR family; InterPro IPR000835:IPR011991:IPR009057; KEGG: sma:SAV_697 hypothetical protein; PFAM: regulatory protein MarR; SPTR: C1YLU5 Transposase, IS30 family; PFAM: MarR family. (251 aa)
Ndas_0421Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR001347:IPR000281; KEGG: ami:Amir_2753 transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: C1YLY0 Transcriptional regulator; PFAM: SIS domain; Helix-turn-helix domain, rpiR family. (277 aa)
Ndas_0395NUDIX hydrolase; COGs: COG4111 conserved hypothetical protein; InterPro IPR000086:IPR015797; KEGG: tfu:Tfu_0576 hypothetical protein; PFAM: NUDIX hydrolase; SPTR: C1YWI3 NUDIX family protein; PFAM: NUDIX domain. (243 aa)
Ndas_0362Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: tfu:Tfu_2393 regulatory protein, MarR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YH47 Transcriptional regulator; PFAM: MarR family. (177 aa)
Ndas_0299Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006; KEGG: sco:SCO5872 turgor pressure regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1YHA8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protei [...] (231 aa)
Ndas_0184Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: tfu:Tfu_0625 regulatory proteins, IclR; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; SPTR: C1YHU4 Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (244 aa)
Ndas_0124Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR011991:IPR000524:IPR011663; KEGG: svi:Svir_33520 transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YHK9 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (257 aa)
Ndas_0100RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR007627:IPR013249:IPR 014284; KEGG: tfu:Tfu_0455 sigma subunit sigma24 -like protein; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YHW5 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)
Ndas_0088Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR011663:IPR000524:IPR011991; KEGG: sro:Sros_0156 putative transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; SPTR: C1YHX8 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (270 aa)
Ndas_0087Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR011663:IPR000524:IPR011991; KEGG: sro:Sros_2096 putative transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SPTR: C1YHX9 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (241 aa)
Ndas_0056methylated-DNA/protein- cysteinemethyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (174 aa)
Ndas_0050Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: msl:Msil_2325 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YR47 Transcriptional regulator, MarR family; PFAM: MarR family. (164 aa)
Ndas_0045Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: fre:Franean1_3111 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YR52 Transcriptional regulator; PFAM: MarR family. (142 aa)
Ndas_0032RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR014284:IPR 007627; KEGG: sgr:SGR_872 RNA polymerase ECF-subfamily sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: C1YR65 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (197 aa)
Ndas_0030Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR011008:IPR011991:IPR019887:IPR019888:IPR 000485; KEGG: sen:SACE_4712 transcription regulator AsnC; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: C1YR67 Transcriptional regulator; PFAM: IclR helix-turn-helix domain; AsnC family. (343 aa)
Ndas_1101InterPro IPR000835:IPR011991; KEGG: sco:SCO7727 MarR family regulatory protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YVV1 Transcriptional regulator, MarR family; PFAM: MarR family. (155 aa)
ADH69117.1Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR005149:IPR011991; KEGG: sro:Sros_4588 transcriptional regulator, PadR-like family; PFAM: transcriptional regulator PadR family protein; SPTR: C1YU15 Predicted transcriptional regulator; tmRNA as predicted by Rfam (RF00023), score 158.82; PFAM: Transcriptional regulator PadR-like family. (110 aa)
Ndas_5569ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: tfu:Tfu_1605 putative xylose repressor; PFAM: ROK family protein; SPTR: C1YPK8 Transcriptional regulator/sugar kinase; PFAM: ROK family; IclR helix-turn-helix domain. (448 aa)
Ndas_5568Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR011991:IPR005149:IPR018309; KEGG: bcv:Bcav_3692 transcriptional regulator, PadR-like family; PFAM: transcriptional regulator PadR family protein; Transcriptional regulator PadR-like; SPTR: C1YPK9 Predicted transcriptional regulator; PFAM: Transcriptional regulator PadR-like family; Virulence activator alpha C-term. (176 aa)
Ndas_5497COGs: COG2345 transcriptional regulator protein; InterPro IPR001845:IPR011991; KEGG: sro:Sros_5865 putative transcriptional regulator; SMART: regulatory protein ArsR; SPTR: C1YPT5 Predicted transcriptional regulator, COG2345. (241 aa)
Ndas_5463Putative RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterProIPR013325:IPR013324:IPR014284:IPR007627:IPR 013249; KEGG: vap:Vapar_1460 putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YPW9 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (420 aa)
Ndas_5415RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR000838:IPR014293:IPR 014284:IPR007627:IPR013249; KEGG: tfu:Tfu_0179 RNA polymerase sigma factor RpoE; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YUD1 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor [...] (211 aa)
Ndas_5390Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterProIPR001867:IPR001789:IPR011991:IPR011006:IPR 016032; KEGG: sro:Sros_8335 response regulator receiver protein; PFAM: transcriptional regulator domain protein; response regulator receiver; SMART: transcriptional regulator domain protein; response regulator receiver; SPTR: C1YUF6 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; T [...] (243 aa)
Ndas_5374Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006:IPR001867; KEGG: cai:Caci_1627 two component transcriptional regulator, winged helix family; PFAM: transcriptional regulator domain protein; response regulator receiver; SMART: transcriptional regulator domain protein; response regulator receiver; SPTR: C1YUH2 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver doma [...] (218 aa)
Ndas_5362RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR014284:IPR 007627; KEGG: sro:Sros_3290 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YVR6 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (203 aa)
Ndas_5315Transcriptional regulator, Crp/Fnr family; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterProIPR014710:IPR011991:IPR018490:IPR018488:IPR 000595:IPR001808:IPR002373:IPR012318; KEGG: tfu:Tfu_0117 cyclic nucleotide-binding: regulatory protein, Crp; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; SPTR: C1YS54 Transcriptional regulator; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain. (228 aa)
Ndas_5314Beta-lactamase domain protein; COGs: COG0491 Zn-dependent hydrolase including glyoxylase; InterPro IPR001279; KEGG: tfu:Tfu_0116 putative hydrolase; SMART: beta-lactamase domain protein; SPTR: C1YS55 Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. (268 aa)
Ndas_5300COGs: COG3629 DNA-binding transcriptional activator of the SARP family; InterProIPR011990:IPR016032:IPR001867:IPR005158:IPR 002182:IPR001440:IPR019734:IPR000767:IPR013026; KEGG: sgr:SGR_5285 putative AfsR-like transcriptional regulator; PFAM: transcriptional activator domain; transcriptional regulator domain protein; NB-ARC domain protein; TPR repeat-containing protein; SPTR: C1YS69 DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal; NB-ARC domain. (1017 aa)
Ndas_5286Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR011991:IPR000524:IPR011663; KEGG: tfu:Tfu_2943 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YS82 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (243 aa)
Ndas_5205ANTAR domain protein with unknown sensor; InterPro IPR011991:IPR011006:IPR005561; KEGG: tfu:Tfu_0293 hypothetical protein; PFAM: ANTAR domain protein; SPTR: C1YI15 Response regulator with putative antiterminator output domain; PFAM: ANTAR domain. (253 aa)
Ndas_5196Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR005829:IPR001789:IPR001867; KEGG: tfu:Tfu_0343 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1YI24 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (232 aa)
Ndas_5191InterPro IPR011991; KEGG: ccs:CCNA_03498 transcriptional regulator, MarR/EmrR family protein; SPTR: C1YI29 Putative uncharacterized protein. (113 aa)
Ndas_5082RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR014284:IPR 007627; KEGG: sro:Sros_7244 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YI83 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (302 aa)
Ndas_5078Response regulator receiver and unknown domain protein; COGs: COG4565 Response regulator of citrate/malate metabolism; InterPro IPR001789:IPR011006; KEGG: sro:Sros_8064 response regulator of citrate/malate metabolism; PFAM: response regulator receiver; SMART: response regulator receiver; SPTR: C1YI87 Response regulator of citrate/malate metabolism; PFAM: HTH domain; Response regulator receiver domain. (228 aa)
Ndas_5036RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR014284:IPR 007627; KEGG: scl:sce6834 ECF family RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YIC7 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (295 aa)
Ndas_5019InterPro IPR011991:IPR001845; KEGG: sgr:SGR_1803 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YIE5 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (227 aa)
Ndas_4988Transcriptional regulator, LuxR family; InterPro IPR016032:IPR011991:IPR000792; KEGG: tfu:Tfu_2880 regulatory protein, LuxR; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: C1YIH5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family. (118 aa)
Ndas_4944Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011991:IPR011006; KEGG: lxx:Lxx22010 two-component system, regulatory protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1YIL9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcr [...] (224 aa)
Ndas_4905Transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR018356:IPR014036; KEGG: sro:Sros_7307 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1YIZ5 Transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (289 aa)
Ndas_4895Transcriptional regulator, MarR family; InterPro IPR000835:IPR011991; KEGG: tfu:Tfu_0351 helix-turn-helix, fis-type; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YJ05 Transcriptional regulator; PFAM: MarR family. (158 aa)
Ndas_4882Putative phytochrome sensor protein; COGs: COG3284 Transcriptional activator of acetoin/glycerol metabolism; InterPro IPR001867:IPR003018; KEGG: sma:SAV_7178 transcriptional regulator; PFAM: transcriptional regulator domain protein; GAF domain protein; SMART: transcriptional regulator domain protein; SPTR: C1YJ18 Transcriptional activator of acetoin/glycerol metabolism. (445 aa)
Ndas_4855RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR007627:IPR 014284; KEGG: tfu:Tfu_3106 RNA polymerase sigma factor SigM; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YRA7 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (208 aa)
Ndas_4825ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: ami:Amir_6189 ROK family protein; PFAM: ROK family protein; SPTR: C1YRD6 Transcriptional regulator/sugar kinase; PFAM: ROK family. (417 aa)
Ndas_4824Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR018309:IPR005149:IPR011991; KEGG: sgr:SGR_826 PadR-like family transcriptional regulator; PFAM: Transcriptional regulator PadR-like; transcriptional regulator PadR family protein; SPTR: C1YRD7 Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family; Virulence activator alpha C-term. (184 aa)
Ndas_4811Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011663; KEGG: tfu:Tfu_0033 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YP46 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (247 aa)
Ndas_4803Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: tfu:Tfu_3048 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; regulatory protein GntR HTH; SPTR: C1YP54 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (225 aa)
Ndas_4793Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterProIPR001789:IPR011991:IPR011006:IPR001867:IPR 005829; KEGG: tfu:Tfu_1330 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1YP65 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (219 aa)
Ndas_4784Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011991:IPR011006; KEGG: cai:Caci_1627 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1YP74 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator rec [...] (218 aa)
Ndas_4772RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR007627:IPR013249:IPR 014284; KEGG: nfa:nfa23350 putative sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YP86 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (182 aa)
Ndas_4755Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: sen:SACE_3768 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR domain protein; SPTR: C1YPA3 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (227 aa)
Ndas_4743ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR019885:IPR000600; KEGG: sro:Sros_3375 ROK family protein; PFAM: ROK family protein; SPTR: C1YPB6 Transcriptional regulator/sugar kinase; PFAM: ROK family. (395 aa)
Ndas_4670Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011006:IPR001867; KEGG: sro:Sros_8764 response regulator receiver protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1YPJ1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (234 aa)
Ndas_4661Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: rop:ROP_20300 putative IclR family transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; SPTR: C1YPK0 Transcriptional regulator, COG1414; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (234 aa)
Ndas_4647Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: kra:Krad_2490 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; regulatory protein GntR HTH; SPTR: C1YG74 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (233 aa)
Ndas_4646RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013325:IPR007627:IPR013249:IPR 014325:IPR014284; KEGG: tfu:Tfu_3022 putative RNA polymerase sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: C1YG75 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-E family; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RN [...] (172 aa)
Ndas_4612RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR007627:IPR013249:IPR 014284; KEGG: sro:Sros_0395 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YGK9 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (943 aa)
Ndas_4595Transcriptional regulator, LuxR family; COGs: COG3899 ATPase; InterPro IPR003593:IPR000792:IPR011991:IPR016032; KEGG: sro:Sros_5515 response regulator receiver protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; AAA ATPase; SPTR: C1YFK2 Transcriptional regulator, luxR family; PFAM: Bacterial regulatory proteins, luxR family. (995 aa)
Ndas_4549Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006:IPR011991; KEGG: svi:Svir_31270 response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1YFP6 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator rec [...] (221 aa)
Ndas_4547Transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR016032:IPR011991; KEGG: ami:Amir_4995 two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: C1YFP8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family. (321 aa)
Ndas_4521InterPro IPR000835:IPR011991; KEGG: tcu:Tcur_0686 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YFT0 Transcriptional regulator, MarR family; PFAM: MarR family. (168 aa)
Ndas_4514Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011991:IPR011006; KEGG: ami:Amir_5698 two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1YFS1 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcripti [...] (225 aa)
Ndas_4498Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: sco:SCO3699 transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YFU6 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (103 aa)
Ndas_4493Transcriptional regulator, ArsR family; COGs: COG1247 Sortase and related acyltransferase; InterPro IPR001845:IPR000182:IPR016181:IPR011991; KEGG: sen:SACE_4980 hypothetical protein; PFAM: GCN5-related N-acetyltransferase; regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YFV1 Sortase-like acyltransferase; PFAM: Bacterial regulatory protein, arsR family; Acetyltransferase (GNAT) family. (302 aa)
Ndas_4472InterPro IPR000835:IPR011991; KEGG: sgr:SGR_762 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YG96 Transcriptional regulator; PFAM: MarR family. (169 aa)
Ndas_4465Regulatory protein, MarR; InterPro IPR011991; KEGG: hau:Haur_4580 regulatory protein, MarR; SPTR: C1YGA3 Putative uncharacterized protein. (164 aa)
Ndas_4438Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011663:IPR011991; KEGG: fal:FRAAL1728 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YGC9 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (246 aa)
Ndas_4376Putative two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR016032:IPR011991; KEGG: tfu:Tfu_2737 transcriptional regulatory protein; PFAM: transcriptional regulator domain protein; SMART: transcriptional regulator domain protein; SPTR: C1YGN4 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Transcriptional regulatory protein, C terminal. (255 aa)
rexCoA-binding domain protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (231 aa)
Ndas_4332Transcriptional repressor, CopY family; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650:IPR011991; KEGG: tfu:Tfu_2916 transcriptional regulator; PFAM: Penicillinase repressor; SPTR: C1YGS8 Predicted transcriptional regulator, COG3682; PFAM: Penicillinase repressor. (120 aa)
Ndas_4322Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR001867:IPR011006:IPR011991; KEGG: tfu:Tfu_2910 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1YGT8 Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (231 aa)
Ndas_4301InterPro IPR000835:IPR011991; KEGG: ami:Amir_2612 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YGW0 Transcriptional regulator; PFAM: MarR family. (160 aa)
Ndas_4294Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterProIPR000524:IPR001647:IPR004111:IPR009057:IPR 011075:IPR011991:IPR012287; KEGG: sro:Sros_2497 putative transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; regulatory protein TetR; Tetracyclin repressor domain protein; SMART: regulatory protein GntR HTH; SPTR: C1YGW7 Transcriptional regulator, TetR family; PFAM: Tetracyclin repressor, C-terminal all-alpha domain; Bacterial regulatory proteins, gntR family; Bacterial regulatory proteins, tetR family. (343 aa)
Ndas_4291Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: spe:Spro_1349 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YGX0 Transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (295 aa)
Ndas_4229Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR011991:IPR000847:IPR005119; KEGG: sen:SACE_5710 putative transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YFZ7 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (305 aa)
Ndas_4202Transcriptional regulator, PadR-like family; InterPro IPR005149:IPR011991; KEGG: sen:SACE_0798 transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: C1YH10 Predicted transcriptional regulator; PFAM: Transcriptional regulator PadR-like family. (197 aa)
Ndas_4167Iron (metal) dependent repressor, DtxR family; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR011991:IPR001367:IPR008988; KEGG: tfu:Tfu_0249 iron dependent repressor; PFAM: iron dependent repressor; SMART: iron dependent repressor; SPTR: C1YG23 Mn-dependent transcriptional regulator; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain. (233 aa)
Ndas_4163Drug resistance transporter, EmrB/QacA subfamily; COGs: COG2814 Arabinose efflux permease; InterPro IPR004638:IPR001411:IPR011701:IPR016196; KEGG: sro:Sros_8653 arabinose efflux permease-like protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1YG27 Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily. (676 aa)
Ndas_4108Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: sco:SCO6565 transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; regulatory protein GntR HTH; SPTR: C1YSF0 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (227 aa)
Ndas_4053ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: xce:Xcel_2402 ROK family protein; PFAM: ROK family protein; SPTR: C1YSD6 Transcriptional regulator/sugar kinase; PFAM: ROK family. (405 aa)
Ndas_4038Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: sco:SCO2544 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; SPTR: C1YSL1 Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (260 aa)
Ndas_4031NUDIX hydrolase; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086:IPR015797:IPR020084; KEGG: sro:Sros_7559 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: C1YSL8 ADP-ribose pyrophosphatase; PFAM: NUDIX domain. (286 aa)
Ndas_4024RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR007627:IPR007630:IPR 014284; KEGG: tfu:Tfu_2597 RNA polymerase sigma factor SigD; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; SPTR: C1YSM5 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (198 aa)
Ndas_3997Transcriptional regulator, DeoR family; COGs: COG2390 Transcriptional regulator contains sigma factor-related N-terminal domain; InterPro IPR007324:IPR018126; KEGG: sgr:SGR_6064 putative transcriptional regulator; PFAM: putative sugar-binding domain protein; SPTR: C1YV52 Transcriptional regulator; PFAM: Putative sugar-binding domain. (312 aa)
Ndas_3993Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: tfu:Tfu_0411 regulatory protein, MarR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YV56 Transcriptional regulator, MarR family; PFAM: MarR family. (169 aa)
Ndas_3962COGs: COG1716 FOG: FHA domain; InterPro IPR000253:IPR008984; KEGG: tfu:Tfu_2570 forkhead-associated; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; SPTR: C1YKN7 FHA domain-containing protein; PFAM: FHA domain. (201 aa)
Ndas_3924Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: tfu:Tfu_2454 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YKS7 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (316 aa)
Ndas_3891RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR014284:IPR007627:IPR 013249; KEGG: tfu:Tfu_0504 RNA polymerase sigma factor SigE; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YKV9 RNA polymerase, sigma 29 subunit, SigE; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (204 aa)
Ndas_3861Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: sma:SAV_1092 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YKY9 Transcriptional regulator; PFAM: MarR family. (141 aa)
Ndas_3846Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR011006:IPR001789:IPR001867:IPR011991; KEGG: tfu:Tfu_2549 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1YL04 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (222 aa)
Ndas_3823Methylated-DNA-(protein)-cysteine S-methyltransferase DNA binding protein; COGs: COG3695 methylated DNA-protein cysteine methyltransferase; InterPro IPR014048:IPR011991; KEGG: tfu:Tfu_0522 hypothetical protein; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; SPTR: Q47SK7 Putative uncharacterized protein; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain. (108 aa)
Ndas_3820Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR011663:IPR000524:IPR011991; KEGG: sgr:SGR_4691 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: UbiC transcription regulator-associated domain protein; SPTR: C1YL34 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (260 aa)
Ndas_3809ANTAR domain protein with unknown sensor; InterPro IPR011006:IPR005561:IPR011991; KEGG: tfu:Tfu_0528 hypothetical protein; PFAM: ANTAR domain protein; SPTR: C1YL44 Response regulator with putative antiterminator output domain; PFAM: ANTAR domain. (162 aa)
Ndas_3785Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: sro:Sros_0290 transcriptional regulator protein-like protein; PFAM: helix-turn-helix HxlR type; SPTR: C1YL68 Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix. (118 aa)
Ndas_3745Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011991:IPR011006; KEGG: tfu:Tfu_2496 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1YLA6 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regu [...] (225 aa)
Ndas_3737Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR011991:IPR011008:IPR019885:IPR019887:IPR 019888:IPR000485; KEGG: sma:SAV_3764 transcription regulator AsnC; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: C1YLB4 Transcriptional regulator, AsnC family; PFAM: IclR helix-turn-helix domain; AsnC family. (150 aa)
Ndas_3733Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR011663:IPR000524:IPR011991; KEGG: tcu:Tcur_4032 transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SPTR: C1YLB8 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (245 aa)
Ndas_3701RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR014293:IPR014284:IPR 007627:IPR013249:IPR000838; KEGG: tfu:Tfu_0548 RNA polymerase sigma factor RpoE; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YU34 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-70 factor [...] (224 aa)
Ndas_3697Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR011663:IPR000524:IPR011991; KEGG: tfu:Tfu_0554 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SPTR: C1YU38 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (246 aa)
Ndas_3692RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; COGs: COG1191 DNA-directed RNA polymerase specialized sigma subunit; InterProIPR013325:IPR013324:IPR014322:IPR014284:IPR 007627:IPR007624:IPR007630:IPR011991:IPR000943; KEGG: tfu:Tfu_0559 RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; SPTR: Q47SH0 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 factor, sigma-B/F/G subfamily; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 3; Sigma-70 region [...] (267 aa)
Ndas_3684Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR005149:IPR011991; KEGG: tfu:Tfu_0563 PadR family transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: C1YU51 Predicted transcriptional regulator; PFAM: Transcriptional regulator PadR-like family. (371 aa)
Ndas_3680Transcriptional repressor, CopY family; COGs: COG3682 transcriptional regulator protein; InterPro IPR005650:IPR011991; KEGG: tfu:Tfu_0567 regulator; PFAM: Penicillinase repressor; SPTR: C1YU55 Predicted transcriptional regulator, COG3682; PFAM: Penicillinase repressor. (139 aa)
Ndas_3664Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sen:SACE_4400 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YU71 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (308 aa)
Ndas_3648Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: saq:Sare_4608 IclR family transcriptional regulator; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; SPTR: C1YQT0 Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (263 aa)
Ndas_3646InterPro IPR000835:IPR011991; KEGG: sgr:SGR_3384 MarR family transcriptional regulator; SMART: regulatory protein MarR; SPTR: C1YQT2 Transcriptional regulator; PFAM: IclR helix-turn-helix domain. (151 aa)
Ndas_3641GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: sen:SACE_3357 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; SPTR: C1YQT7 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (238 aa)
Ndas_3617Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR011991:IPR011008:IPR019885:IPR019887:IPR 019888:IPR000485; KEGG: sro:Sros_2332 putative transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: C1YQW1 Transcriptional regulator, AsnC family; PFAM: IclR helix-turn-helix domain; AsnC family. (154 aa)
Ndas_3610Transcriptional regulator, LuxR family; COGs: COG3903 ATPase; InterProIPR016032:IPR000792:IPR011991:IPR019734:IPR 000767; KEGG: tfu:Tfu_0757 TPR repeat-containing regulatory protein LuxR; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; Tetratricopeptide repeat; SPTR: C1YQW8 Predicted ATPase, COG3903; PFAM: Bacterial regulatory proteins, luxR family. (840 aa)
Ndas_3609Transcriptional regulator, LuxR family; COGs: COG3903 ATPase; InterProIPR000792:IPR000767:IPR011991:IPR013026:IPR 016032; KEGG: tfu:Tfu_0758 regulatory protein, LuxR; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: C1YQW9 Predicted ATPase, COG3903; PFAM: Bacterial regulatory proteins, luxR family; NB-ARC domain. (818 aa)
Ndas_3581RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR014284:IPR 007627; KEGG: sro:Sros_3479 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: C1YQZ6 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (274 aa)
Ndas_3575Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: tcu:Tcur_3979 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YR02 Transcriptional regulator; PFAM: MarR family. (173 aa)
Ndas_3560Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: sen:SACE_1548 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; SPTR: C1YR17 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (236 aa)
Ndas_3536Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sma:SAV_4773 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YVY0 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (318 aa)
Ndas_3513Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196:IPR001034:IPR011991; KEGG: sro:Sros_6203 DeoR family transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; SPTR: C1YQ17 Predicted transcriptional regulator, COG2378; PFAM: HTH domain. (322 aa)
Ndas_3479Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: sme:SMa0520 transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: C1YQ52 Transcriptional regulator; PFAM: Helix-turn-helix domain, rpiR family. (280 aa)
Ndas_3472Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR005149:IPR011991; KEGG: sma:SAV_3228 PadR-family transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: C1YQ60 Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family. (174 aa)
Ndas_3367InterPro IPR000835:IPR011991; KEGG: cai:Caci_8819 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YSZ4 Transcriptional regulator; PFAM: MarR family. (154 aa)
Ndas_3347Transcriptional regulator, ArsR family; COGs: COG0640 transcriptional regulator protein; InterPro IPR001845:IPR011991; KEGG: sen:SACE_5771 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YT14 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (115 aa)
lexATranscriptional repressor, LexA family; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (239 aa)
sigA-2RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (571 aa)
Ndas_3275Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: ach:Achl_1001 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR domain protein; SPTR: C1YW99 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (242 aa)
Ndas_3244Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR011991:IPR011008:IPR019888:IPR019887:IPR 000485; KEGG: tfu:Tfu_2240 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: C1YSQ5 Transcriptional regulator; PFAM: IclR helix-turn-helix domain; AsnC family. (163 aa)
Ndas_3222InterPro IPR005149:IPR011991; KEGG: sgr:SGR_4074 PadR-like family transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: C1YSS7 Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family. (206 aa)
Ndas_3216Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: xce:Xcel_3335 transcriptional regulator, HxlR family; PFAM: helix-turn-helix HxlR type; SPTR: C1YST1 Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix. (132 aa)
Ndas_3203Transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: tfu:Tfu_0422 BadM/Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; SPTR: C1YSU4 Rrf2 family protein, putative transcriptional regulator; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator). (143 aa)
Ndas_3199Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR005149:IPR011991; KEGG: tfu:Tfu_1147 PadR family transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: C1YSU8 Predicted transcriptional regulator; PFAM: Transcriptional regulator PadR-like family. (277 aa)
Ndas_3159Response regulator receiver and ANTAR domain protein; COGs: COG3707 Response regulator with putative antiterminator output domain; InterProIPR001789:IPR005561:IPR011991:IPR008327:IPR 011006; KEGG: tfu:Tfu_1181 response regulator receiver; PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; SPTR: C1YUR5 Response regulator with putative antiterminator output domain; PFAM: Response regulator receiver domain; ANTAR domain. (212 aa)
Ndas_3063Transcriptional regulator, MarR family; InterPro IPR000835:IPR011991; KEGG: tfu:Tfu_2059 regulatory protein, MarR; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YVE2 Transcriptional regulator; PFAM: MarR family. (168 aa)
argRArginine repressor, ArgR; Regulates arginine biosynthesis genes. (177 aa)
Ndas_3002Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: tcu:Tcur_3621 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; SPTR: C1YRT8 Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (253 aa)
Ndas_2964COGs: COG2345 transcriptional regulator protein; InterPro IPR001845; KEGG: tfu:Tfu_1988 transcriptional regulator; PFAM: regulatory protein ArsR; SPTR: C1YRX9 Transcriptional regulator; PFAM: HTH domain. (258 aa)
Ndas_2926Regulatory protein, MarR; InterPro IPR011991; KEGG: bcv:Bcav_3656 regulatory protein, MarR; SPTR: C1YS18 Predicted transcriptional regulator; PFAM: Sugar-specific transcriptional regulator TrmB. (163 aa)
Ndas_2909Putative transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: sro:Sros_7390 hypothetical protein; SMART: regulatory protein ArsR; SPTR: C1YW00 Transcriptional regulator, ArsR family. (243 aa)
Ndas_2906Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR001034:IPR013196:IPR018356; KEGG: sen:SACE_7244 DeoR family transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; SPTR: C1YW03 Predicted transcriptional regulator, COG2378; PFAM: HTH domain. (334 aa)
Ndas_2898Transcriptional regulator, winged helix family; COGs: COG3903 ATPase; InterPro IPR000767:IPR001867:IPR005158:IPR016032; KEGG: sro:Sros_6790 ATPase-like protein; PFAM: transcriptional activator domain; transcriptional regulator domain protein; SPTR: C1YW10 Predicted ATPase, COG3903; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal. (1094 aa)
Ndas_2885Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011991:IPR001867:IPR011006; KEGG: tfu:Tfu_1941 response regulator receiver; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1YJW1 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (217 aa)
Ndas_2868RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR007627:IPR013249:IPR013325:IPR013324:IPR 014284; KEGG: sma:SAV_4064 ECF subfamily RNA polymerase sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: C1YJX8 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (195 aa)
Ndas_2855ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: tfu:Tfu_1923 putative transcriptional repressor protein; PFAM: ROK family protein; SPTR: C1YJZ1 Transcriptional regulator/sugar kinase; PFAM: ROK family. (396 aa)
Ndas_2841Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: ace:Acel_2082 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YK05 Transcriptional regulator; PFAM: MarR family. (153 aa)
Ndas_2822Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011663; KEGG: sro:Sros_9128 putative transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YK25 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (259 aa)
Ndas_2790Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sro:Sros_2019 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YK58 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (330 aa)
Ndas_2786Transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036:IPR018356; KEGG: tfu:Tfu_1851 regulatory protein, DeoR; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1YK62 Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (268 aa)
Ndas_2773Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: bcv:Bcav_1519 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YK75 Transcriptional regulator; PFAM: MarR family. (157 aa)
Ndas_2764Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: bcv:Bcav_0927 transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YK84 Transcriptional regulator; PFAM: MarR family. (199 aa)
Ndas_2705Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: ami:Amir_4192 ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; SPTR: C1YKE6 Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family; Belongs to the Fur family. (139 aa)
Ndas_2690Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196:IPR001034:IPR018356; KEGG: saq:Sare_4377 helix-turn-helix type 11 domain-containing protein; PFAM: Helix-turn-helix type 11 domain protein; SPTR: C1YKG1 Predicted transcriptional regulator, COG2378; PFAM: HTH domain. (324 aa)
Ndas_2689N-6 DNA methylase; COGs: COG0286 Type I restriction-modification system methyltransferase subunit; InterPro IPR002296:IPR003356; KEGG: sco:SCO3104 hypothetical protein; PFAM: N-6 DNA methylase; SPTR: C1YKG2 Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase. (709 aa)
Ndas_2648Transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: sco:SCO2652 hypothetical protein; PFAM: protein of unknown function UPF0074; SPTR: C1YKK4 Transcriptional regulator, BadM/Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator). (150 aa)
Ndas_2625Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR011663:IPR000524:IPR011991; KEGG: bpt:Bpet1988 GntR family transcriptional regulator; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SPTR: C1YVK5 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (295 aa)
Ndas_2607GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: rop:ROP_26620 putative GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YT44 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (234 aa)
Ndas_2592GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR010916:IPR000524:IPR011711:IPR011991; KEGG: sma:SAV_7278 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YT58 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (240 aa)
Ndas_2572Transcriptional regulator, GntR family; COGs: COG1725 transcriptional regulator protein; InterPro IPR000524:IPR011991; KEGG: tfu:Tfu_1406 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YT76 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family. (120 aa)
Ndas_2569RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (468 aa)
Ndas_2545Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: tfu:Tfu_1422 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YTA3 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (309 aa)
Ndas_2544Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: tfu:Tfu_1423 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YTA4 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (300 aa)
Ndas_2542InterPro IPR011991; KEGG: tcu:Tcur_0081 transcriptional regulator, MarR/EmrR family protein; SPTR: C1YTA7 Transcriptional regulator. (106 aa)
Ndas_2537O-methyltransferase family 2; InterPro IPR016461:IPR001077:IPR011991; KEGG: sen:SACE_4031 phenazine-specific methyltransferase; PFAM: O-methyltransferase family 2; SPTR: C1YTB2 O-methyltransferase; PFAM: O-methyltransferase. (339 aa)
Ndas_2510GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR011711:IPR011991; KEGG: sen:SACE_3480 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YM21 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (240 aa)
Ndas_2500Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: ach:Achl_0352 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YM30 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (297 aa)
Ndas_2456Transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR014036; KEGG: sen:SACE_3462 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1YM75 Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (257 aa)
Ndas_2452Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: ami:Amir_5127 transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YM79 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (308 aa)
Ndas_2432Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789:IPR011006:IPR011991; KEGG: tcu:Tcur_4661 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; SPTR: C1YM99 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family. (233 aa)
Ndas_2421Transcriptional regulator, LuxR family; COGs: COG3899 ATPase; InterPro IPR011717:IPR000792:IPR011991:IPR016032; KEGG: sen:SACE_2899 LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; SPTR: C1YMB0 Transcriptional regulator, luxR family; PFAM: Bacterial regulatory proteins, luxR family. (939 aa)
Ndas_2415Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: aav:Aave_1296 HxlR family transcriptional regulator; PFAM: helix-turn-helix HxlR type; SPTR: C1YMB6 Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix. (144 aa)
Ndas_2412COGs: COG3629 DNA-binding transcriptional activator of the SARP family; InterPro IPR001867:IPR005158:IPR016032; KEGG: ami:Amir_0205 transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; SPTR: C1YMB9 DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal. (370 aa)
Ndas_2394Transcriptional regulator, MarR family; InterPro IPR000835; KEGG: sro:Sros_3478 hypothetical protein; SMART: regulatory protein MarR; SPTR: C1YMD7 Transcriptional regulator. (148 aa)
Ndas_2387Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR011991; KEGG: ami:Amir_3961 transcriptional regulator, LysR family; PFAM: regulatory protein LysR; SPTR: C1YME4 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family. (334 aa)
Ndas_2384Transcriptional regulator, ArgP, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR017685:IPR005119:IPR011991; KEGG: aau:AAur_1007 chromosome replication initiation inhibitor protein; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YME7 Transcriptional regulator, LysR family; TIGRFAM: transcriptional regulator, ArgP family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; TIGRFAM: transcriptional regulator, ArgP family. (298 aa)
Ndas_2372Transcriptional regulator, RpiR family; COGs: COG1737 Transcriptional regulators; InterPro IPR000281:IPR001347; KEGG: sgr:SGR_3009 putative transcriptional regulator; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); SPTR: C1YMF9 Transcriptional regulator; PFAM: SIS domain; Helix-turn-helix domain, rpiR family. (310 aa)
Ndas_2362Transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR018356:IPR014036; KEGG: cai:Caci_0893 transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1YMG9 Transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (261 aa)
Ndas_2335Transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR018356:IPR014036; KEGG: psp:PSPPH_4844 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1YMJ6 Transcriptional regulator, DeoR family; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (268 aa)
Ndas_2287Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757:IPR012794; KEGG: svi:Svir_13060 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; SPTR: C1YUX7 Transcriptional regulator, IclR family; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. (267 aa)
Ndas_2260Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: svi:Svir_27620 predicted transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YV78 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (183 aa)
Ndas_2214Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sma:SAV_3360 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YTX8 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (331 aa)
Ndas_2178COGs: COG1587 Uroporphyrinogen-III synthase; InterPro IPR003754:IPR001867:IPR011991:IPR016032; KEGG: sco:SCO2958 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; PFAM: Uroporphyrinogen III synthase HEM4; transcriptional regulator domain protein; SPTR: C1YWH3 Uroporphyrinogen-III synthase; PFAM: Transcriptional regulatory protein, C terminal; Uroporphyrinogen-III synthase HemD. (391 aa)
Ndas_2159Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR019887:IPR011991:IPR000485:IPR019888:IPR 011008; KEGG: cai:Caci_4349 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: C1YML8 Transcriptional regulator; PFAM: AsnC family. (157 aa)
Ndas_2155Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196:IPR001034; KEGG: sro:Sros_0452 helix-turn-helix type 11 domain protein; PFAM: Helix-turn-helix type 11 domain protein; SPTR: C1YMM2 Predicted transcriptional regulator, COG2378; PFAM: HTH domain. (324 aa)
Ndas_2140COGs: COG3629 DNA-binding transcriptional activator of the SARP family; InterPro IPR003593:IPR005158:IPR001867:IPR016032; KEGG: ami:Amir_6166 transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; SMART: transcriptional regulator domain protein; AAA ATPase; SPTR: C1YMN7 DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal. (1153 aa)
Ndas_2135Putative RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterProIPR007627:IPR013249:IPR014284:IPR013325:IPR 013324; KEGG: rop:ROP_37090 putative RNA polymerase ECF-type sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1B8F3 Putative RNA polymerase ECF-type sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (428 aa)
Ndas_2122InterPro IPR000835:IPR011991; KEGG: sro:Sros_3541 transcriptional regulator, Mar family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YMQ4 Transcriptional regulator; PFAM: MarR family. (165 aa)
Ndas_2117Iron (metal) dependent repressor, DtxR family; COGs: COG1321 Mn-dependent transcriptional regulator protein; InterPro IPR001367:IPR008988:IPR007167; KEGG: tfu:Tfu_1664 iron dependent repressor; PFAM: iron dependent repressor; FeoA family protein; SMART: iron dependent repressor; SPTR: C1YMQ9 Mn-dependent transcriptional regulator; PFAM: FeoA domain; Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain. (233 aa)
Ndas_2098Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196:IPR001034:IPR018356; KEGG: sro:Sros_4133 DeoR family transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; SPTR: C1YMS9 Predicted transcriptional regulator, COG2378; PFAM: HTH domain. (318 aa)
Ndas_2081KEGG: sro:Sros_9193 hypothetical protein; SPTR: C1YMU6 Putative uncharacterized protein. (135 aa)
Ndas_2078Transcriptional regulator, LuxR family; COGs: COG3903 ATPase; InterPro IPR016032:IPR011991:IPR000792; KEGG: sro:Sros_8841 ATPase-like protein; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: C1YMU9 Predicted ATPase, COG3903; PFAM: Bacterial regulatory proteins, luxR family. (940 aa)
Ndas_2073Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sen:SACE_3695 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YMV4 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (285 aa)
Ndas_2064Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR011991:IPR013196:IPR018356:IPR001034; KEGG: sro:Sros_5404 DeoR family transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; SPTR: C1YMW4 Predicted transcriptional regulator, COG2378; PFAM: HTH domain. (337 aa)
Ndas_2010COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterProIPR015424:IPR011991:IPR015421:IPR000524:IPR 004839; KEGG: sgr:SGR_5946 transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; SPTR: C1YN18 Transcriptional regulator with HTH domain and aminotransferase domain; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family. (483 aa)
Ndas_1998Helix-turn-helix type 11 domain protein; COGs: COG2378 transcriptional regulator protein; InterPro IPR013196:IPR001034:IPR011991:IPR018356; KEGG: sro:Sros_5244 DeoR family transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; SPTR: C1YN30 Predicted transcriptional regulator, COG2378; PFAM: HTH domain. (334 aa)
Ndas_1988Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: sco:SCO1703 transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YN40 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (235 aa)
Ndas_1986Transcriptional regulator, MarR family; InterPro IPR011991:IPR000835; KEGG: sro:Sros_2316 transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YN42 Transcriptional regulator; PFAM: MarR family. (161 aa)
Ndas_1936Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR011991:IPR000835; KEGG: sen:SACE_0188 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YTC8 Transcriptional regulator, MarR family; PFAM: MarR family. (155 aa)
Ndas_1916Putative RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterProIPR013324:IPR013249:IPR013325:IPR014284:IPR 007627; KEGG: rop:ROP_49580 RNA polymerase ECF-type sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YTD6 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (381 aa)
Ndas_1890Transcriptional regulator, LuxR family; COGs: COG3899 ATPase; InterPro IPR016032:IPR011991:IPR000792; KEGG: sco:SCO5065 transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: C1YTG0 Transcriptional regulator, luxR family; PFAM: Bacterial regulatory proteins, luxR family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (929 aa)
Ndas_1885Putative RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterProIPR013325:IPR013324:IPR007627:IPR013249:IPR 014284; KEGG: bcv:Bcav_4127 putative RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YTG5 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (439 aa)
Ndas_1865Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR011991:IPR000835; KEGG: sen:SACE_4080 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YWD6 Transcriptional regulator, MarR family; PFAM: MarR family. (177 aa)
Ndas_1853Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR011991:IPR000847:IPR005119; KEGG: tfu:Tfu_1740 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YWL9 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (350 aa)
Ndas_1841InterPro IPR001845:IPR011991; KEGG: sgr:SGR_4402 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YNP1 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (103 aa)
Ndas_1830Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: rha:RHA1_ro06953 transcriptional regulator; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; SPTR: C1YNQ1 Transcriptional regulator, COG1414; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (264 aa)
Ndas_1823Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011991:IPR011006; KEGG: sen:SACE_6095 two-component system, response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1YNQ8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transc [...] (241 aa)
Ndas_1808Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR001789:IPR011991:IPR011006; KEGG: sen:SACE_3669 putative two-component system response regulator; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C1YNS3 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family. (201 aa)
Ndas_1806COGs: COG3629 DNA-binding transcriptional activator of the SARP family; InterProIPR016032:IPR019734:IPR001867:IPR005158:IPR 011717:IPR001440:IPR011991:IPR011990; KEGG: stp:Strop_4244 transcriptional activator domain-containing protein; PFAM: transcriptional activator domain; transcriptional regulator domain protein; Tetratricopeptide TPR_4; TPR repeat-containing protein; SPTR: C1YNS5 DNA-binding transcriptional activator of the SARP family; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal; Tetratricopeptide repeat. (1060 aa)
Ndas_1798Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: ach:Achl_0443 transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YNT3 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (318 aa)
Ndas_1791InterPro IPR001845:IPR018334:IPR011991; KEGG: mkm:Mkms_1492 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YNU0 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (121 aa)
Ndas_1786InterPro IPR005149:IPR011991; KEGG: saq:Sare_1537 PadR-like family transcriptional regulator; PFAM: transcriptional regulator PadR family protein; SPTR: C1YNU5 Predicted transcriptional regulator; PFAM: Transcriptional regulator PadR-like family. (186 aa)
Ndas_1768Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: fal:FRAAL3543 putative transcriptional regulator; PFAM: helix-turn-helix HxlR type; SPTR: C1YNW3 Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix. (127 aa)
Ndas_1767Transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterPro IPR000792:IPR016032:IPR011991; KEGG: sco:SCO1370 two component system DNA binding response regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; SPTR: C1YNW4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family. (248 aa)
Ndas_1738Response regulator receiver protein; InterPro IPR016032:IPR011991; KEGG: tcu:Tcur_3448 transcriptional regulator, LuxR family; SPTR: C1YNZ5 Putative uncharacterized protein. (251 aa)
Ndas_1714Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: nfa:nfa27680 putative transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YP20 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (119 aa)
Ndas_1698Transcriptional regulator, MarR family; InterPro IPR000835:IPR011991; KEGG: sro:Sros_4437 transcriptional regulators-like protein; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YP36 MarR family regulator; PFAM: MarR family. (161 aa)
Ndas_1694RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013325:IPR013324:IPR014284:IPR014303:IPR 007627:IPR013249; KEGG: sma:SAV_909 ECF subfamily RNA polymerase sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: C1YP40 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02957 family; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymera [...] (314 aa)
Ndas_1684Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: sco:SCO0574 IclR family regulatory protein; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; SPTR: C1YWJ6 Transcriptional regulator, COG1414; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (283 aa)
Ndas_1674Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: rer:RER_58130 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YJ32 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (297 aa)
Ndas_1666Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: mjl:Mjls_2639 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YJH3 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (302 aa)
Ndas_1659Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sco:SCO0262 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YJI0 Transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain. (313 aa)
Ndas_1633Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001867:IPR001789:IPR011991:IPR011006; KEGG: sco:SCO5872 turgor pressure regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; transcriptional regulator domain protein; SPTR: C1YJK7 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulat [...] (254 aa)
Ndas_1631GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: mta:Moth_2304 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; regulatory protein GntR HTH; SPTR: C1YJK9 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (267 aa)
Ndas_1604COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterProIPR000524:IPR015424:IPR004839:IPR011991:IPR 015421; KEGG: sro:Sros_7670 putative transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; SPTR: C1YJP2 Transcriptional regulator with HTH domain and aminotransferase domain; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family. (494 aa)
Ndas_1564InterPro IPR000835:IPR011991; KEGG: cms:CMS_0118 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YJT2 Transcriptional regulator; PFAM: MarR family. (159 aa)
Ndas_1514Two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001789:IPR011991:IPR011006:IPR001867; KEGG: pac:PPA0119 two-component response regulator, KdpE; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; SPTR: C1YJ71 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (229 aa)
Ndas_1422Regulatory protein GntR HTH; COGs: COG2186 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011711; KEGG: tfu:Tfu_1374 GntR family transcriptional regulator; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; SPTR: C1YJE9 Transcriptional regulator, GntR family; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (233 aa)
Ndas_1420Putative transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR019885:IPR000485:IPR011991:IPR011008:IPR 019888; KEGG: tfu:Tfu_1373 AsnC family transcriptional regulator; SMART: Transcription regulator, AsnC-type; SPTR: C1YJF1 Transcriptional regulator. (302 aa)
Ndas_1408COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterProIPR000524:IPR011991:IPR015424:IPR015422:IPR 004839:IPR015421; KEGG: tcu:Tcur_2248 transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; SPTR: C1YRF1 Transcriptional regulator, GntR family; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family. (488 aa)
Ndas_1389Putative two component transcriptional regulator, winged helix family; COGs: COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; InterPro IPR001412:IPR011991:IPR016032:IPR001867; KEGG: tfu:Tfu_1501 response regulator; PFAM: transcriptional regulator domain protein; SPTR: C1YRH0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain; PFAM: Transcriptional regulatory protein, C terminal. (171 aa)
Ndas_1379GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: tfu:Tfu_1785 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: GntR domain protein; regulatory protein GntR HTH; SPTR: C1YRI0 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (243 aa)
Ndas_1372Transcriptional regulator, winged helix family; COGs: COG3903 ATPase; InterProIPR005158:IPR001867:IPR000767:IPR011990:IPR 011717:IPR016032; KEGG: sgr:SGR_3470 putative AfsR-like transcriptional regulator; PFAM: transcriptional activator domain; transcriptional regulator domain protein; Tetratricopeptide TPR_4; SMART: transcriptional regulator domain protein; SPTR: C1YRI7 Predicted ATPase, COG3903; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal. (1227 aa)
Ndas_1350Transcriptional repressor, CopY family; COGs: COG3682 transcriptional regulator protein; InterPro IPR011991:IPR005650; KEGG: sen:SACE_0615 CopY family transcriptional regulator; PFAM: Penicillinase repressor; SPTR: C1YRL0 Predicted transcriptional regulator, COG3682; PFAM: Penicillinase repressor. (122 aa)
Ndas_1318Transcriptional regulator, HxlR family; COGs: COG1733 transcriptional regulator protein; InterPro IPR002577; KEGG: nfa:nfa29560 putative transcriptional regulator; PFAM: helix-turn-helix HxlR type; SPTR: C1YRP1 Predicted transcriptional regulator; PFAM: HxlR-like helix-turn-helix. (141 aa)
Ndas_1302Transcriptional regulator, MarR family; COGs: COG1846 Transcriptional regulators; InterPro IPR000835:IPR011991; KEGG: fre:Franean1_3111 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YRQ6 Transcriptional regulator; PFAM: MarR family. (142 aa)
Ndas_1262RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR000838:IPR014305:IPR014284:IPR013325:IPR 013324:IPR007627:IPR013249:IPR002075; KEGG: rha:RHA1_ro05361 RNA polymerase factor sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; nuclear transport factor 2; SPTR: C1YU74 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; Nuclear transport factor 2 (NTF2) domain; TIG [...] (330 aa)
Ndas_1243Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sco:SCO3773 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YU94 Transcriptional regulator, LysR family; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (307 aa)
Ndas_1195Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: bam:Bamb_6272 LysR family transcriptional regulator; PFAM: regulatory protein LysR; LysR substrate-binding; SPTR: C1YTK4 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (339 aa)
Ndas_1174InterPro IPR001845:IPR011991; KEGG: sen:SACE_3779 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YTM5 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (109 aa)
Ndas_1149O-methyltransferase family 2; InterPro IPR016461:IPR001077:IPR000843; KEGG: sen:SACE_4560 O-methyltransferase family protein; PFAM: O-methyltransferase family 2; SPTR: C1YUJ7 O-methyltransferase; PFAM: O-methyltransferase. (342 aa)
Ndas_1145O-methyltransferase family 2; InterPro IPR016461:IPR001077; KEGG: bja:blr7665 putative methyltransferase; PFAM: O-methyltransferase family 2; SPTR: C1YUK1 O-methyltransferase; PFAM: O-methyltransferase. (338 aa)
Ndas_1135InterPro IPR011991; KEGG: tcu:Tcur_2204 hypothetical protein; SPTR: C1YUL1 Putative uncharacterized protein. (174 aa)
Ndas_1130Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: nml:Namu_3326 transcriptional regulator, IclR family; PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; SPTR: C1YUL6 Transcriptional regulator, COG1414; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (252 aa)
Ndas_1079Two component transcriptional regulator, LuxR family; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; InterProIPR000792:IPR001789:IPR011991:IPR011006:IPR 016032; KEGG: cai:Caci_1897 two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; SPTR: C1YWA5 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR [...] (200 aa)
Ndas_1068InterPro IPR001845:IPR011991; KEGG: xce:Xcel_3343 transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YWB6 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (329 aa)
Ndas_1060Transcriptional regulator, ArsR family; InterPro IPR001845:IPR011991; KEGG: sen:SACE_4355 transcription regulator ArsR; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YWL2 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (145 aa)
Ndas_1024Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: cmi:CMM_2938 ferric uptake regulator family protein; PFAM: ferric-uptake regulator; SPTR: C1YVN6 Fe2+/Zn2+ uptake regulation protein; PFAM: Ferric uptake regulator family; Belongs to the Fur family. (131 aa)
Ndas_1000Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: sen:SACE_4337 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR domain protein; SPTR: C1YTQ8 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (313 aa)
Ndas_0994RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR014284:IPR014303:IPR007627:IPR013249:IPR 013325:IPR013324; KEGG: sco:SCO7112 ECF family RNA polymerase sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YTR4 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, TIGR02957 family; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase [...] (323 aa)
Ndas_0975Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (224 aa)
Ndas_0926Transcriptional regulator, LuxR family; COGs: COG3899 ATPase; InterProIPR000792:IPR011717:IPR016032:IPR011990:IPR 011991; KEGG: tcu:Tcur_0848 transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; SPTR: C1YQH0 Putative uncharacterized protein; PFAM: Bacterial regulatory proteins, luxR family. (999 aa)
Ndas_0914Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sro:Sros_4400 transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YQI3 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; TIGRFAM: ModE molybdate transport repressor domain. (301 aa)
Ndas_0873InterPro IPR000835:IPR011991; KEGG: tfu:Tfu_1087 MarR family transcriptional regulator; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; SPTR: C1YQM4 Transcriptional regulator; PFAM: MarR family. (157 aa)
Ndas_0869Putative RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterProIPR007627:IPR013249:IPR004107:IPR014284:IPR 013325:IPR010998:IPR013324; KEGG: sro:Sros_4226 RNA polymerase sigma factor containing a TPR repeat domain-like protein; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; integrase domain protein SAM domain protein; SPTR: C1YQM8 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Phage integrase, N-terminal SAM-like [...] (651 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (382 aa)
Ndas_0836NUDIX hydrolase; COGs: COG1051 ADP-ribose pyrophosphatase; InterPro IPR000086:IPR015797; KEGG: tcu:Tcur_3138 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: C1YQR2 ADP-ribose pyrophosphatase; PFAM: NUDIX domain. (263 aa)
Ndas_0830Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sen:SACE_4609 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YQR9 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (313 aa)
Ndas_0789Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR019888:IPR019887:IPR000485:IPR011991:IPR 011008; KEGG: sen:SACE_3951 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: C1YV22 Transcriptional regulator, AsnC family; PFAM: Sugar-specific transcriptional regulator TrmB; AsnC family. (145 aa)
Ndas_0785Transcriptional regulator, AsnC family; COGs: COG1522 Transcriptional regulators; InterProIPR019885:IPR019887:IPR019888:IPR000485:IPR 011991:IPR011008; KEGG: tfu:Tfu_0920 AsnC family transcriptional regulator; PFAM: Transcription regulator, AsnC-type-like; SMART: Transcription regulator, AsnC-type; SPTR: C1YN68 Transcriptional regulator, AsnC family; PFAM: AsnC family. (157 aa)
Ndas_0778Transcriptional regulator, DeoR family; COGs: COG1349 Transcriptional regulators of sugar metabolism; InterPro IPR001034:IPR018356:IPR014036; KEGG: tfu:Tfu_0907 DeoR family transcriptional regulator; PFAM: regulatory protein DeoR; SMART: regulatory protein DeoR; SPTR: C1YN75 Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (256 aa)
sigARNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (364 aa)
Ndas_0742Transcriptional regulator, PadR-like family; COGs: COG1695 transcriptional regulator protein; InterPro IPR005149:IPR011991; KEGG: rha:RHA1_ro00244 hypothetical protein; PFAM: transcriptional regulator PadR family protein; SPTR: C1YNB4 Transcriptional regulator, PadR family; PFAM: Transcriptional regulator PadR-like family. (124 aa)
Ndas_0734Ferric uptake regulator, Fur family; COGs: COG0735 Fe2+/Zn2+ uptake regulation protein; InterPro IPR002481; KEGG: tfu:Tfu_0856 zinc uptake regulator; PFAM: ferric-uptake regulator; SPTR: C1YNC4 Zinc uptake regulator, Fur family; PFAM: Ferric uptake regulator family; Belongs to the Fur family. (123 aa)
Ndas_0716Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: sco:SCO2644 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YNE3 Transcriptional regulator, COG0583; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family. (308 aa)
Ndas_0712Transcriptional regulator, IclR family; COGs: COG1414 Transcriptional regulator; InterPro IPR005471:IPR014757; KEGG: tfu:Tfu_0849 regulatory proteins, IclR; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; SPTR: C1YNE8 Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (265 aa)
Ndas_0705RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR014284:IPR 007627:IPR014325; KEGG: tfu:Tfu_0842 RNA polymerase ECF-subfamily sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: C1YNF5 RNA polymerase sigma factor, sigma-70 family/RNA polymerase sigma-70 factor, sigma-E family; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFA [...] (176 aa)
hrcAHeat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. (337 aa)
Ndas_0679RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR014284:IPR 007627; KEGG: sgr:SGR_872 RNA polymerase ECF-subfamily sigma factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; SPTR: C1YNI1 RNA polymerase sigma factor, sigma-70 family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (189 aa)
recXRegulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. (194 aa)
Ndas_0663RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterProIPR013324:IPR013249:IPR013325:IPR014284:IPR 007627; KEGG: nfa:nfa4970 putative sigma factor; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: C1YNJ8 RNA polymerase, sigma subunit, ECF family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family. (295 aa)
Ndas_0660ROK family protein; COGs: COG1940 Transcriptional regulator/sugar kinase; InterPro IPR000600; KEGG: sro:Sros_2180 transcriptional regulator ROK family; PFAM: ROK family protein; SPTR: C1YNK1 Transcriptional regulator/sugar kinase; PFAM: ROK family. (404 aa)
Ndas_0655Transcriptional regulator, BadM/Rrf2 family; COGs: COG1959 transcriptional regulator protein; InterPro IPR000944; KEGG: tfu:Tfu_0800 BadM/Rrf2 family transcriptional regulator; PFAM: protein of unknown function UPF0074; SPTR: C1YNK6 Transcriptional regulator, BadM/Rrf2 family; TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: Transcriptional regulator; TIGRFAM: rrf2 family protein (putative transcriptional regulator). (154 aa)
Ndas_0648Cell division protein FtsK/SpoIIIE; COGs: COG1674 DNA segregation ATPase FtsK/SpoIIIE and related protein; InterPro IPR002543:IPR018541:IPR003593; KEGG: tfu:Tfu_0793 ATPase; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; SPTR: C1YNL3 DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; Belongs to the FtsK/SpoIIIE/SftA family. (838 aa)
Ndas_0615COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterProIPR000524:IPR011991:IPR004839:IPR015424:IPR 015422:IPR015421; KEGG: sro:Sros_2586 putative transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; SPTR: C1YLE0 Transcriptional regulator with HTH domain and aminotransferase domain; PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II. (491 aa)
Ndas_0603InterPro IPR009061; KEGG: saq:Sare_3570 excisionase/Xis, DNA-binding; SPTR: C1YLF2 Putative uncharacterized protein. (58 aa)
Ndas_0590Transcriptional regulator, GntR family; COGs: COG2188 Transcriptional regulators; InterPro IPR011663:IPR000524:IPR011991; KEGG: sma:SAV_3736 regulatory protein KorSA; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SPTR: C1YLG2 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (254 aa)
Ndas_0582Transcriptional regulator, LysR family; COGs: COG0583 Transcriptional regulator; InterPro IPR000847:IPR005119:IPR011991; KEGG: tfu:Tfu_2254 LysR family transcriptional regulator; PFAM: LysR substrate-binding; regulatory protein LysR; SPTR: C1YLG9 Transcriptional regulator, COG0583; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain. (312 aa)
Ndas_0561Transcriptional regulator, GntR family; COGs: COG1802 Transcriptional regulators; InterPro IPR000524:IPR011991:IPR011711; KEGG: kra:Krad_2145 transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; SPTR: C1YLJ0 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (242 aa)
Ndas_0553GntR domain protein; COGs: COG2186 Transcriptional regulators; InterPro IPR011711:IPR000524:IPR011991; KEGG: sth:STH97 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; GntR domain protein; SPTR: C1YLJ8 Transcriptional regulator; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (253 aa)
Ndas_0526InterPro IPR001845:IPR011991; KEGG: tfu:Tfu_2299 ArsR family transcriptional regulator; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; SPTR: C1YLM5 Transcriptional regulator, ArsR family; PFAM: Bacterial regulatory protein, arsR family. (112 aa)
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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