STRINGSTRING
Snas_0656 Snas_0656 Snas_1126 Snas_1126 Snas_2889 Snas_2889 Snas_3130 Snas_3130 Snas_3621 Snas_3621 Snas_3702 Snas_3702 Snas_4653 Snas_4653
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snas_0656KEGG: lch:Lcho_2410 periplasmic binding protein/LacI transcriptional regulator. (326 aa)
Snas_1126KEGG: rso:RSp1633 D-xylose-binding periplasmic ABC transporter protein. (367 aa)
Snas_2889KEGG: rec:RHECIAT_CH0003387 xylose ABC transporter, substrate-binding protein. (359 aa)
Snas_3130PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_B0894 ABC sugar transporter, periplasmic ligand binding protein. (335 aa)
Snas_3621PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_B0894 ABC sugar transporter, periplasmic ligand binding protein. (329 aa)
Snas_3702TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: bxe:Bxe_B1038 ABC sugar transporter, periplasmic ligand binding protein. (343 aa)
Snas_4653ABC-type sugar transport system periplasmic component-like protein; KEGG: bmt:BSUIS_B0991 hypothetical protein. (397 aa)
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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