10 items (Dictyostelium discoideum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdk5	Cyclin-dependent kinase 5 homolog. (292 aa)
	DDB_G0294575	Ankyrin repeat-containing protein. (1641 aa)
	DDB_G0292550	Probable cyclin-dependent serine/threonine-protein kinase DDB_G0292550; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. (1397 aa)
	DDB0188206	Uncharacterized protein. (427 aa)
	DDB0186996	CYCLIN domain-containing protein. (398 aa)
	DDB0203462	Uncharacterized protein. (1476 aa)
	DDB_G0272797	Putative cyclin-dependent serine/threonine-protein kinase DDB_G0272797/DDB_G0274007; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily. (680 aa)
	DDB0168012	Uncharacterized protein. (970 aa)
	DDB0217047	Uncharacterized protein. (1379 aa)
	DDB0169187	Uncharacterized protein. (391 aa)

Your Current Organism:

Dictyostelium discoideum

NCBI taxonomy Id: 44689
Other names: D. discoideum

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDB0168012	DDB0169187	Q556N9	Q75K08	Uncharacterized protein.	Uncharacterized protein.	0.454
DDB0168012	DDB0186996	Q556N9	Q54LQ8	Uncharacterized protein.	CYCLIN domain-containing protein.	0.454
DDB0168012	DDB0188206	Q556N9	Q54I52	Uncharacterized protein.	Uncharacterized protein.	0.454
DDB0168012	DDB0203462	Q556N9	Q551V3	Uncharacterized protein.	Uncharacterized protein.	0.811
DDB0168012	DDB0217047	Q556N9	Q559G7	Uncharacterized protein.	Uncharacterized protein.	0.809
DDB0168012	DDB_G0272797	Q556N9	Q556J6	Uncharacterized protein.	Putative cyclin-dependent serine/threonine-protein kinase DDB_G0272797/DDB_G0274007; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.	0.828
DDB0168012	DDB_G0292550	Q556N9	Q54D75	Uncharacterized protein.	Probable cyclin-dependent serine/threonine-protein kinase DDB_G0292550; Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamily.	0.830
DDB0168012	DDB_G0294575	Q556N9	Q1ZXJ5	Uncharacterized protein.	Ankyrin repeat-containing protein.	0.811
DDB0168012	cdk5	Q556N9	P34117	Uncharacterized protein.	Cyclin-dependent kinase 5 homolog.	0.828
DDB0169187	DDB0168012	Q75K08	Q556N9	Uncharacterized protein.	Uncharacterized protein.	0.454
DDB0169187	DDB0203462	Q75K08	Q551V3	Uncharacterized protein.	Uncharacterized protein.	0.776
DDB0169187	DDB0217047	Q75K08	Q559G7	Uncharacterized protein.	Uncharacterized protein.	0.776
DDB0169187	DDB_G0294575	Q75K08	Q1ZXJ5	Uncharacterized protein.	Ankyrin repeat-containing protein.	0.776
DDB0186996	DDB0168012	Q54LQ8	Q556N9	CYCLIN domain-containing protein.	Uncharacterized protein.	0.454
DDB0186996	DDB0203462	Q54LQ8	Q551V3	CYCLIN domain-containing protein.	Uncharacterized protein.	0.776
DDB0186996	DDB0217047	Q54LQ8	Q559G7	CYCLIN domain-containing protein.	Uncharacterized protein.	0.776
DDB0186996	DDB_G0294575	Q54LQ8	Q1ZXJ5	CYCLIN domain-containing protein.	Ankyrin repeat-containing protein.	0.776
DDB0188206	DDB0168012	Q54I52	Q556N9	Uncharacterized protein.	Uncharacterized protein.	0.454
DDB0188206	DDB0203462	Q54I52	Q551V3	Uncharacterized protein.	Uncharacterized protein.	0.776
DDB0188206	DDB0217047	Q54I52	Q559G7	Uncharacterized protein.	Uncharacterized protein.	0.776