STRINGSTRING
DDB_G0274695 DDB_G0274695 Dd5P4 Dd5P4 chmp7 chmp7 lvsB lvsB DDB_G0274775 DDB_G0274775 chmp4 chmp4 vamp7B vamp7B Syn16B Syn16B cpnA cpnA cnrF cnrF DDB_G0271676 DDB_G0271676 sybA sybA vwkA vwkA DDB0202238 DDB0202238 rab32B rab32B Syn1B Syn1B lvsA lvsA sec31 sec31 Vps18 Vps18 DDB_G0269942 DDB_G0269942 mgp2 mgp2 DDB0190801 DDB0190801 DDB0216749 DDB0216749 wimA wimA DDB0202904 DDB0202904 lvsD lvsD DDB0216913 DDB0216913 sarA sarA DDB0202550 DDB0202550 DDB0202554 DDB0202554 syn8A syn8A DDB0202500 DDB0202500 DDB0229988 DDB0229988 DDB0203874 DDB0203874 Syn16A Syn16A syn5 syn5 DDB0218004 DDB0218004 sec24l sec24l vps11 vps11 ClmA ClmA sarB sarB syn7B syn7B ap1b1 ap1b1 DDB0218182 DDB0218182 DDB_G0280955 DDB_G0280955 sec24 sec24 drkC drkC sec23 sec23 DDB0205268 DDB0205268 DDB0205282 DDB0205282 sodC sodC DDB_G0283011 DDB_G0283011 washc4 washc4 Vti1B Vti1B yipf5 yipf5 rab32A rab32A gpr89 gpr89 DDB0185711 DDB0185711 DDB0185714 DDB0185714 sir2A sir2A syn6 syn6 Syn10 Syn10 vamp7A vamp7A vmp1 vmp1 DDB0186473 DDB0186473 DDB0186475 DDB0186475 Dnajc13 Dnajc13 Vps41 Vps41 chmp6 chmp6 rab11B rab11B rab7B rab7B syn7A syn7A chmp5 chmp5 DDB0219315 DDB0219315 syn8B syn8B washc5 washc5 DDB0188240 DDB0188240 apm1 apm1 Syn1A Syn1A mgp1 mgp1 sybB sybB rabM rabM rabL rabL rabN1 rabN1 rabK1 rabK1 rabN2 rabN2 DDB0183788 DDB0183788 vacA2 vacA2 racGAP racGAP sec13 sec13 DDB0184259 DDB0184259 DDB0184357 DDB0184357 vti1A vti1A DDB_G0275795 DDB_G0275795 DDB_G0290827 DDB_G0290827 rabK3 rabK3 DDB_G0294571 DDB_G0294571 rabK2 rabK2 rtoA rtoA pikB pikB pikA pikA cap cap rab11A rab11A rab7A rab7A rab14 rab14 rab8A rab8A mhcA mhcA phgA phgA DDB_G0274805 DDB_G0274805 vps39 vps39 lmpA lmpA abcG2 abcG2 racH racH pcp pcp apm3 apm3 dymA dymA abcG18 abcG18 rab32C rab32C
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
DDB_G0274695SH3 and F-BAR domain-containing protein DDB_G0274695. (389 aa)
Dd5P4Inositol 5-phosphatase 4. (787 aa)
chmp7Charged multivesicular body protein 7; Plays a role in the endosomal sorting pathway; Belongs to the SNF7 family. (477 aa)
lvsBBEACH domain-containing protein lvsB; Involved in negative regulation of lysosome biogenesis, by limiting the heterotypic fusion of early endosomes and postlysosomal compartments. (4118 aa)
DDB_G0274775PH domain-containing protein DDB_G0274775. (458 aa)
chmp4Charged multivesicular body protein 4; Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins. (215 aa)
vamp7BVesicle-associated membrane protein 7B; Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion (By similarity); Belongs to the synaptobrevin family. (260 aa)
Syn16Bt-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (335 aa)
cpnACopine-A; Required for cytokinesis, contractile vacuole function and development; Belongs to the copine family. (600 aa)
cnrFRabGAP/TBC domain-containing protein. (986 aa)
DDB_G0271676SH3 and F-BAR domain-containing protein DDB_G0271676. (533 aa)
sybASynaptobrevin-A; Involved in the targeting and/or fusion of transport vesicles to their target membrane. (95 aa)
vwkAAlpha-protein kinase vwkA; Displays a modest preference for threonine over serine residues. Does not phosphorylate myosin II, however can phosphorylate MBP, in vitro. May be involved in the regulation of myosin II function during cytokinesis. Overexpression leads to impaired cell proliferation in suspension culture and fails to develop beyond the mound stage. Both overexpression and absence of the gene can result in defects in cytokinesis and alterations in myosin II abundance and assembly. (625 aa)
DDB0202238Uncharacterized protein. (270 aa)
rab32BRas-related protein Rab-32B; Belongs to the small GTPase superfamily. Rab family. (260 aa)
Syn1Bt-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (334 aa)
lvsABEACH domain-containing protein lvsA; Involved in myosin-independent cytokinesis and early steps of phagocytosis. Also involved in contractile vacuole-mediated osmoregulation. (3619 aa)
sec31Protein transport protein SEC31; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules (By similarity). (1355 aa)
Vps18Pep3_Vps18 domain-containing protein. (1077 aa)
DDB_G0269942Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)
mgp2Mental retardation GTPase activating protein homolog 2; Rho GTPase-activating protein involved in the signal transduction pathway (By similarity). Regulator of the contractile vacuole network as well as involved in driving vacuole emptying. (877 aa)
DDB0190801Uncharacterized protein. (646 aa)
DDB0216749Uncharacterized protein. (782 aa)
wimAProtein transport protein sec16; Belongs to the SEC16 family. (1992 aa)
DDB0202904Uncharacterized protein. (325 aa)
lvsDBEACH domain-containing protein lvsD. (2967 aa)
DDB0216913Uncharacterized protein. (471 aa)
sarAGTP-binding protein Sar1A; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules (By similarity). (188 aa)
DDB0202550Uso1_p115_head domain-containing protein. (1048 aa)
DDB0202554PH domain-containing protein. (346 aa)
syn8ASyntaxin-8A; Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for fusion of late endosomes with lysosomes and homotypic lysosomal fusion. (152 aa)
DDB0202500t-SNARE coiled-coil homology domain-containing protein. (184 aa)
DDB0229988ADP-ribosylation factor-related. (837 aa)
DDB0203874Uncharacterized protein. (391 aa)
Syn16At-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (314 aa)
syn5t-SNARE family protein. (302 aa)
DDB0218004CNH domain-containing protein. (1068 aa)
sec24lUncharacterized protein. (1133 aa)
vps11Vacuolar protein sorting-associated protein 11 homolog; May play a role in vesicle-mediated protein trafficking. Belongs to the VPS11 family. (952 aa)
ClmAENTH domain-containing protein. (695 aa)
sarBGTP-binding protein Sar1B; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules (By similarity). (194 aa)
syn7BProbable syntaxin-7B. (286 aa)
ap1b1AP-1 complex subunit beta; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. Also involved in early steps of phagocytosis and macropinocytosis. (942 aa)
DDB0218182t-SNARE coiled-coil homology domain-containing protein. (265 aa)
DDB_G0280955RabGAP/TBC domain-containing protein. (733 aa)
sec24Protein transport protein SEC24; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules (By similarity). (1013 aa)
drkCProbable serine/threonine-protein kinase drkC. (749 aa)
sec23Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules (By similarity). (750 aa)
DDB0205268VWFA domain-containing protein. (698 aa)
DDB0205282Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (568 aa)
sodCExtracellular superoxide dismutase [Cu-Zn] 3; Protect the extracellular space from toxic effect of reactive oxygen intermediates by converting superoxyde radicals into hydrogen peroxyde and oxygen. (407 aa)
DDB_G0283011t-SNARE coiled-coil homology domain-containing protein. (119 aa)
washc4WASH complex subunit 4. (1135 aa)
Vti1BUncharacterized protein. (269 aa)
yipf5Protein YIPF5 homolog; Plays a role in transport between endoplasmic reticulum and Golgi; Belongs to the YIP1 family. (212 aa)
rab32ARas-related protein Rab-32A. (219 aa)
gpr89Golgi pH regulator homolog. (547 aa)
DDB0185711Uncharacterized protein. (351 aa)
DDB0185714Uncharacterized protein. (256 aa)
sir2ANAD-dependent deacetylase sir2A; NAD-dependent deacetylase, which plays an important role in the regulation of transcriptional repression; Belongs to the sirtuin family. (512 aa)
syn6t-SNARE coiled-coil homology domain-containing protein. (231 aa)
Syn10t-SNARE coiled-coil homology domain-containing protein. (257 aa)
vamp7AVesicle-associated membrane protein 7A; Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion. Required for calcium regulated lysosomal exocytosis; Belongs to the synaptobrevin family. (216 aa)
vmp1Vacuole membrane protein 1 homolog; Required for organelle biogenesis, protein secretion, and development. Required for maintaining integrity of the endoplasmic reticulum. May play a role in autophagy. (403 aa)
DDB0186473t-SNARE coiled-coil homology domain-containing protein. (232 aa)
DDB0186475Uncharacterized protein. (63 aa)
Dnajc13J domain-containing protein. (2592 aa)
Vps41RING-type domain-containing protein; Belongs to the VPS41 family. (1087 aa)
chmp6Charged multivesicular body protein 6; Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins (By similarity). (218 aa)
rab11BRas-related protein Rab-11B. (220 aa)
rab7BRas-related protein Rab-7B; Protein transport. Probably involved in vesicular traffic (By similarity). (197 aa)
syn7ASyntaxin-7A; Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for fusion of late endosomes with lysosomes and homotypic lysosomal fusion. May be involved in protein trafficking from the plasma membrane to the early endosome (EE) as well as in homotypic fusion of endocytic organelles. Belongs to the syntaxin family. (356 aa)
chmp5Charged multivesicular body protein 5; Probable peripherally associated component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and are delivered to lysosomes enabling degradation of membrane proteins (By similarity). (215 aa)
DDB0219315Uncharacterized protein. (824 aa)
syn8BProbable syntaxin-8B. (250 aa)
washc5WASH complex subunit 5. (1164 aa)
DDB0188240Uncharacterized protein. (271 aa)
apm1AP-1 complex subunit mu; Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the trans-Golgi network (TGN) and endosomes. The AP complexes mediate the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules. Also involved in early steps of phagocytosis and macropinocytosis. (428 aa)
Syn1At-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (333 aa)
mgp1Mental retardation GTPase activating protein homolog 1; Rho GTPase-activating protein involved in the signal transduction pathway (By similarity). Regulator of the contractile vacuole network as well as involved in driving vacuole emptying. (920 aa)
sybBSynaptobrevin-B; Involved in the targeting and/or fusion of transport vesicles to their target membrane; Belongs to the synaptobrevin family. (101 aa)
rabMRas-related protein RabM. (202 aa)
rabLRas-related protein RabL. (204 aa)
rabN1Ras-related protein RabN1. (216 aa)
rabK1Ras-related protein RabK1; Belongs to the small GTPase superfamily. Rab family. (213 aa)
rabN2Ras-related protein RabN2; Belongs to the small GTPase superfamily. Rab family. (184 aa)
DDB0183788PKD_channel domain-containing protein. (823 aa)
vacA2RING-type domain-containing protein. (1751 aa)
racGAPUncharacterized protein. (1350 aa)
sec13Protein SEC13 homolog; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 [...] (301 aa)
DDB0184259Arf-GAP domain-containing protein. (522 aa)
DDB0184357Uncharacterized protein. (1121 aa)
vti1AVesicle transport through interaction with t-SNAREs homolog 1A; V-SNARE that mediates vesicle transport pathways through interactions with t-SNAREs on the target membrane. These interactions are proposed to mediate aspects of the specificity of vesicle trafficking and to promote fusion of the lipid bilayers. Belongs to the VTI1 family. (217 aa)
DDB_G0275795PH domain-containing protein DDB_G0275795. (808 aa)
DDB_G0290827Rab GTPase domain-containing protein. (250 aa)
rabK3Ras-related protein RabK3; Belongs to the small GTPase superfamily. Rab family. (148 aa)
DDB_G0294571Rab GTPase. (203 aa)
rabK2Ras-related protein RabK2. (147 aa)
rtoAProtein rtoA; May have dual functions, one in vegetative cells at starvation involving cell-type choice and a later function involving progression to the tipped mound stage. Involved in vesicle fusion in endo- and exocytosis. Involved in L.pneumophila intracellular growth. (367 aa)
pikBPhosphatidylinositol 3-kinase 2. (1857 aa)
pikAPhosphatidylinositol 3-kinase 1. (1571 aa)
capAdenylyl cyclase-associated protein; May have a regulatory bifunctional role. Binds G-actin and PIP2. Involved in microfilament reorganization near the plasma membrane in a PIP2-regulated manner. (464 aa)
rab11ARas-related protein Rab-11A; Required for normal contractile vacuole structure and function. Cells expressing a dominant negative rab11A exhibit a more extensive contractile vacuole network and enlarged contractile vacuole bladders. These cells exhibit a functional defect in osmotic regulation where cells immersed in water become rounded and detach from the surface, and contain swollen contractile vacuoles. Belongs to the small GTPase superfamily. Rab family. (214 aa)
rab7ARas-related protein Rab-7A; Key regulator in endo-lysosomal trafficking. Governs early- to-late endosomal maturation, microtubule minus-end as well as plus-end directed endosomal migration and positioning, and endosome-lysosome transport through different protein-protein interaction cascades (By similarity). Involved in lipophagy, a cytosolic lipase-independent autophagic pathway (By similarity); Belongs to the small GTPase superfamily. Rab family. (203 aa)
rab14Ras-related protein Rab-14; Regulates the fusion of phagosomes and lysosomes. Belongs to the small GTPase superfamily. Rab family. (206 aa)
rab8ARas-related protein Rab-8A; Protein transport. Probably involved in vesicular traffic (By similarity); Belongs to the small GTPase superfamily. Rab family. (208 aa)
mhcAMyosin-2 heavy chain; Myosin is a protein that binds to actin and has ATPase activity that is activated by actin; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (2116 aa)
phgADrainin; May act as a GTPase-activating protein for Rab family protein(s) (By similarity). Required for osmotic regulation by the contractile vacuole in hypo-osmotic environments. Essential for periodic fusion of the contractile vacuole with the plasma membrane and consequent expulsion of water from the cell body. (438 aa)
DDB_G0274805SH3 domain-containing protein. (357 aa)
vps39Tetratricopeptide-like helical domain-containing protein. (851 aa)
lmpALysosome membrane protein 2-A; May act as a lysosomal receptor (By similarity). May be involved in macropinocytosis and fluid phase exocytosis. Binds to the anionic phospholipid phosphoinositol 4,5-bisphosphate, but not to phosphatidylcholine and only weakly to phosphatidylserine. Belongs to the CD36 family. (779 aa)
abcG2ABC transporter G family member 2; Required for endocytosis and endosomal pH regulation. Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily. (1328 aa)
racHRho-related protein racH. (200 aa)
pcpParacaspase; Not required for DIF-induced autophagic cell death and necrotic cell death; Belongs to the peptidase C14B family. (406 aa)
apm3AP-3 complex subunit mu; Part of the AP-3 complex, an adaptor-related complex which is essential for the compartmentalization of the endocytic pathway. (421 aa)
dymADynamin-A; Function in membrane trafficking processes along the endo- lysosomal pathway. (853 aa)
abcG18ABC transporter G family member 18; Required for endocytosis and endosomal pH regulation. (1476 aa)
rab32CRas-related protein Rab-32C; Belongs to the small GTPase superfamily. Rab family. (224 aa)
Your Current Organism:
Dictyostelium discoideum
NCBI taxonomy Id: 44689
Other names: D. discoideum
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