(8 nodes) Gram-negative bacterial TonB protein C-terminal network (Tenacibaculum soleae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OCK43157.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (265 aa)
	OCK43153.1	BlaR1 peptidase M56; Derived by automated computational analysis using gene prediction method: Protein Homology. (504 aa)
	OCK43316.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (230 aa)
	OCK43318.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (225 aa)
	OCK43319.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (207 aa)
	OCK43386.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	OCK43387.1	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	OCK42822.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (372 aa)

Your Current Organism:

Tenacibaculum soleae

NCBI taxonomy Id: 447689
Other names: CECT 7292, NCIMB 14368, T. soleae, Tenacibaculum soleae Pineiro-Vidal et al. 2008, strain LL04 12.1.7

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OCK43316.1	OCK43318.1	BA195_01020	BA195_01030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.424
OCK43318.1	OCK43316.1	BA195_01030	BA195_01020	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.424
OCK43318.1	OCK43319.1	BA195_01030	BA195_01035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.535
OCK43319.1	OCK43318.1	BA195_01035	BA195_01030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.535
OCK43386.1	OCK43387.1	BA195_01390	BA195_01395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
OCK43387.1	OCK43386.1	BA195_01395	BA195_01390	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664