(41 nodes) Positive regulation of transcription, DNA-templated network (Gracilariopsis chorda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BWQ96_04277	CCHC-type domain-containing protein. (162 aa)
	BWQ96_03437	Transcription elongation factor SPT4. (124 aa)
	BWQ96_03430	Homogentisate solanesyltransferase, chloroplastic. (267 aa)
	BWQ96_03626	Transcription initiation factor TFIID subunit 6. (539 aa)
	BWQ96_03563	Transcriptional adapter 2. (383 aa)
	BWQ96_02989	Protein Dr1. (141 aa)
	BWQ96_02951	Cyclin-dependent kinase C-1; Belongs to the protein kinase superfamily. (391 aa)
	BWQ96_03265	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (497 aa)
	BWQ96_02730	PITH domain-containing protein 1. (212 aa)
	BWQ96_03002	Transcriptional adapter 2-beta. (1314 aa)
	BWQ96_02406	Cell division cycle protein 73. (468 aa)
	BWQ96_02671	Cyclin-T1-5; Belongs to the cyclin family. (342 aa)
	BWQ96_02479	WD repeat-containing protein 75. (977 aa)
	BWQ96_01958	Transcription initiation factor TFIID subunit 8. (308 aa)
	BWQ96_09967	Multiprotein-bridging factor 1b. (127 aa)
	BWQ96_09361	Transcription initiation factor TFIID subunit 11. (200 aa)
	BWQ96_08707	THO complex subunit 5-like. (598 aa)
	BWQ96_08375	Protein PAM68, chloroplastic. (200 aa)
	BWQ96_07707	Myocyte-specific enhancer factor 2D. (666 aa)
	BWQ96_07687	FACT complex subunit SPT16. (1100 aa)
	BWQ96_06774	Golgin candidate 5. (675 aa)
	BWQ96_06573	Nuclear transcription factor Y subunit B-1. (124 aa)
	BWQ96_06484	Uncharacterized protein. (214 aa)
	BWQ96_06456	Cyclin-dependent kinase C-1; Belongs to the protein kinase superfamily. (359 aa)
	BWQ96_06033	Myocyte-specific enhancer factor 2D. (82 aa)
	BWQ96_05488	Membrane-bound transcription factor site-2 protease. (535 aa)
	BWQ96_05418	U3 small nucleolar RNA-associated protein 15-like. (522 aa)
	BWQ96_04934	ATPase family AAA domain-containing protein 2. (1438 aa)
	BWQ96_04874	Myocyte-specific enhancer factor 2D-like. (630 aa)
	BWQ96_03644	Transcription initiation factor TFIID subunit 6. (369 aa)
	BWQ96_01755	Nuclear factor related to kappa-B-binding protein. (486 aa)
	BWQ96_01467	Myocyte-specific enhancer factor 2D. (394 aa)
	BWQ96_02562	Dr1-associated corepressor. (223 aa)
	BWQ96_01661	Transcription elongation factor SPT6-like. (1978 aa)
	BWQ96_01790	Homeobox protein HD-5. (693 aa)
	BWQ96_00923	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (720 aa)
	BWQ96_00794	Akirin-1. (203 aa)
	BWQ96_00699	Histone-lysine N-methyltransferase trithorax. (882 aa)
	BWQ96_00586	Uncharacterized protein. (660 aa)
	BWQ96_00621	Armadillo repeat-containing protein LFR. (730 aa)
	BWQ96_00660	Myocyte-specific enhancer factor 2D. (628 aa)

Your Current Organism:

Gracilariopsis chorda

NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BWQ96_00699	BWQ96_07687	A0A2V3J4Y9	A0A2V3IKI3	Histone-lysine N-methyltransferase trithorax.	FACT complex subunit SPT16.	0.715
BWQ96_01661	BWQ96_02406	A0A2V3J305	A0A2V3J001	Transcription elongation factor SPT6-like.	Cell division cycle protein 73.	0.919
BWQ96_01661	BWQ96_02671	A0A2V3J305	A0A2V3J0S2	Transcription elongation factor SPT6-like.	Cyclin-T1-5; Belongs to the cyclin family.	0.403
BWQ96_01661	BWQ96_02951	A0A2V3J305	A0A2V3IYW5	Transcription elongation factor SPT6-like.	Cyclin-dependent kinase C-1; Belongs to the protein kinase superfamily.	0.461
BWQ96_01661	BWQ96_03437	A0A2V3J305	A0A2V3IX62	Transcription elongation factor SPT6-like.	Transcription elongation factor SPT4.	0.964
BWQ96_01661	BWQ96_06456	A0A2V3J305	A0A2V3IP24	Transcription elongation factor SPT6-like.	Cyclin-dependent kinase C-1; Belongs to the protein kinase superfamily.	0.461
BWQ96_01661	BWQ96_07687	A0A2V3J305	A0A2V3IKI3	Transcription elongation factor SPT6-like.	FACT complex subunit SPT16.	0.977
BWQ96_01958	BWQ96_03626	A0A2V3J1P3	A0A2V3IY80	Transcription initiation factor TFIID subunit 8.	Transcription initiation factor TFIID subunit 6.	0.965
BWQ96_01958	BWQ96_03644	A0A2V3J1P3	A0A2V3IX60	Transcription initiation factor TFIID subunit 8.	Transcription initiation factor TFIID subunit 6.	0.965
BWQ96_01958	BWQ96_09361	A0A2V3J1P3	A0A2V3IFQ2	Transcription initiation factor TFIID subunit 8.	Transcription initiation factor TFIID subunit 11.	0.998
BWQ96_02406	BWQ96_01661	A0A2V3J001	A0A2V3J305	Cell division cycle protein 73.	Transcription elongation factor SPT6-like.	0.919
BWQ96_02406	BWQ96_02671	A0A2V3J001	A0A2V3J0S2	Cell division cycle protein 73.	Cyclin-T1-5; Belongs to the cyclin family.	0.500
BWQ96_02406	BWQ96_02951	A0A2V3J001	A0A2V3IYW5	Cell division cycle protein 73.	Cyclin-dependent kinase C-1; Belongs to the protein kinase superfamily.	0.517
BWQ96_02406	BWQ96_03437	A0A2V3J001	A0A2V3IX62	Cell division cycle protein 73.	Transcription elongation factor SPT4.	0.917
BWQ96_02406	BWQ96_06456	A0A2V3J001	A0A2V3IP24	Cell division cycle protein 73.	Cyclin-dependent kinase C-1; Belongs to the protein kinase superfamily.	0.517
BWQ96_02406	BWQ96_07687	A0A2V3J001	A0A2V3IKI3	Cell division cycle protein 73.	FACT complex subunit SPT16.	0.996
BWQ96_02479	BWQ96_05418	A0A2V3J1G1	A0A2V3IRT9	WD repeat-containing protein 75.	U3 small nucleolar RNA-associated protein 15-like.	0.999
BWQ96_02562	BWQ96_02989	A0A2V3J2S5	A0A2V3IYJ6	Dr1-associated corepressor.	Protein Dr1.	0.988
BWQ96_02562	BWQ96_06573	A0A2V3J2S5	A0A2V3INK7	Dr1-associated corepressor.	Nuclear transcription factor Y subunit B-1.	0.496
BWQ96_02671	BWQ96_01661	A0A2V3J0S2	A0A2V3J305	Cyclin-T1-5; Belongs to the cyclin family.	Transcription elongation factor SPT6-like.	0.403