(40 nodes) Basal transcription factors network (Gracilariopsis chorda)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BWQ96_10284	Cyclin-H. (358 aa)
	BWQ96_09830	Plant-specific TFIIB-related protein 1. (827 aa)
	BWQ96_09439	HemK methyltransferase family member 2. (283 aa)
	BWQ96_09361	Transcription initiation factor TFIID subunit 11. (200 aa)
	BWQ96_08968	rRNA biogenesis protein RRP5. (2098 aa)
	BWQ96_08670	Putative rRNA-processing protein EBP2-like. (338 aa)
	BWQ96_09054	Transcription initiation factor TFIID subunit 7. (355 aa)
	BWQ96_07781	Transcription initiation factor TFIID subunit 12. (134 aa)
	BWQ96_07492	Transcription initiation factor IIA subunit 1. (222 aa)
	BWQ96_06776	General transcription factor IIH subunit 5. (114 aa)
	BWQ96_06497	Transcription initiation factor IIE subunit alpha. (427 aa)
	BWQ96_07461	DNA repair helicase XPD. (782 aa)
	BWQ96_06446	CDK-activating kinase assembly factor MAT1. (256 aa)
	BWQ96_05721	Transcription initiation factor IIB. (337 aa)
	BWQ96_05655	Cyclin-dependent kinase D-3. (360 aa)
	BWQ96_05568	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (463 aa)
	BWQ96_05820	Transcription initiation factor TFIID subunit 5. (787 aa)
	BWQ96_05830	GFO_IDH_MocA domain-containing protein. (366 aa)
	BWQ96_05398	RNA polymerase II transcription factor B subunit 4. (356 aa)
	BWQ96_05346	TATA-box-binding protein. (243 aa)
	BWQ96_05007	TFIIH basal transcription factor complex helicase repB subunit. (855 aa)
	BWQ96_04871	General transcription factor IIH subunit. (426 aa)
	BWQ96_04214	Transcription initiation factor TFIID subunit 1. (1653 aa)
	BWQ96_03739	PH_TFIIH domain-containing protein. (413 aa)
	BWQ96_03504	Transcription initiation factor TFIID subunit 13. (118 aa)
	BWQ96_03644	Transcription initiation factor TFIID subunit 6. (369 aa)
	BWQ96_03380	TAF4 domain-containing protein. (989 aa)
	BWQ96_03422	DNA repair helicase XPD. (783 aa)
	BWQ96_03626	Transcription initiation factor TFIID subunit 6. (539 aa)
	BWQ96_03057	DIRP domain-containing protein. (543 aa)
	BWQ96_03386	Transcription initiation factor TFIID subunit 4B. (989 aa)
	BWQ96_03069	Transcription initiation factor TFIID subunit 10. (143 aa)
	BWQ96_02847	Transcription initiation factor TFIID subunit 9. (326 aa)
	BWQ96_01958	Transcription initiation factor TFIID subunit 8. (308 aa)
	BWQ96_01760	General transcription factor IIF subunit 2. (320 aa)
	BWQ96_01762	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (104 aa)
	BWQ96_01180	Transcription initiation factor TFIID subunit 2. (1472 aa)
	BWQ96_01101	Transcription initiation factor TFIID subunit 5. (849 aa)
	BWQ96_00805	General transcription factor IIE subunit 2. (223 aa)
	BWQ96_01242	Inhibitor of growth protein. (292 aa)

Your Current Organism:

Gracilariopsis chorda

NCBI taxonomy Id: 448386
Other names: G. chorda, Gracilaria chorda

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BWQ96_00805	BWQ96_01101	A0A2V3J517	A0A2V3J4V3	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 5.	0.827
BWQ96_00805	BWQ96_01180	A0A2V3J517	A0A2V3J4J5	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 2.	0.886
BWQ96_00805	BWQ96_01760	A0A2V3J517	A0A2V3J2B1	General transcription factor IIE subunit 2.	General transcription factor IIF subunit 2.	0.994
BWQ96_00805	BWQ96_01762	A0A2V3J517	A0A2V3J2N1	General transcription factor IIE subunit 2.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.983
BWQ96_00805	BWQ96_01958	A0A2V3J517	A0A2V3J1P3	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 8.	0.871
BWQ96_00805	BWQ96_02847	A0A2V3J517	A0A2V3J0B3	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 9.	0.831
BWQ96_00805	BWQ96_03069	A0A2V3J517	A0A2V3IZL7	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 10.	0.870
BWQ96_00805	BWQ96_03380	A0A2V3J517	A0A2V3IXL1	General transcription factor IIE subunit 2.	TAF4 domain-containing protein.	0.847
BWQ96_00805	BWQ96_03386	A0A2V3J517	A0A2V3IYU4	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 4B.	0.847
BWQ96_00805	BWQ96_03422	A0A2V3J517	A0A2V3IXV1	General transcription factor IIE subunit 2.	DNA repair helicase XPD.	0.942
BWQ96_00805	BWQ96_03504	A0A2V3J517	A0A2V3IX03	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 13.	0.925
BWQ96_00805	BWQ96_03626	A0A2V3J517	A0A2V3IY80	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 6.	0.745
BWQ96_00805	BWQ96_03644	A0A2V3J517	A0A2V3IX60	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 6.	0.745
BWQ96_00805	BWQ96_03739	A0A2V3J517	A0A2V3IWI1	General transcription factor IIE subunit 2.	PH_TFIIH domain-containing protein.	0.992
BWQ96_00805	BWQ96_04214	A0A2V3J517	A0A2V3IVC1	General transcription factor IIE subunit 2.	Transcription initiation factor TFIID subunit 1.	0.882
BWQ96_00805	BWQ96_04871	A0A2V3J517	A0A2V3ITA6	General transcription factor IIE subunit 2.	General transcription factor IIH subunit.	0.994
BWQ96_00805	BWQ96_05007	A0A2V3J517	A0A2V3ISZ9	General transcription factor IIE subunit 2.	TFIIH basal transcription factor complex helicase repB subunit.	0.995
BWQ96_00805	BWQ96_05346	A0A2V3J517	A0A2V3IRU9	General transcription factor IIE subunit 2.	TATA-box-binding protein.	0.981
BWQ96_00805	BWQ96_05398	A0A2V3J517	A0A2V3IRS3	General transcription factor IIE subunit 2.	RNA polymerase II transcription factor B subunit 4.	0.993
BWQ96_00805	BWQ96_05568	A0A2V3J517	A0A2V3IRG1	General transcription factor IIE subunit 2.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.992