STRINGSTRING
clpX clpX GCA_001661675_03724 GCA_001661675_03724 A9D14_18305 A9D14_18305 A9D14_18215 A9D14_18215 atpD-2 atpD-2 GCA_001661675_03527 GCA_001661675_03527 A9D14_16105 A9D14_16105 GCA_001661675_03107 GCA_001661675_03107 A9D14_15085 A9D14_15085 GCA_001661675_02857 GCA_001661675_02857 A9D14_14000 A9D14_14000 A9D14_13650 A9D14_13650 rho rho A9D14_13080 A9D14_13080 A9D14_12900 A9D14_12900 A9D14_12805 A9D14_12805 A9D14_12665 A9D14_12665 A9D14_12505 A9D14_12505 ftsH ftsH A9D14_12205 A9D14_12205 A9D14_12120 A9D14_12120 A9D14_11875 A9D14_11875 A9D14_11580 A9D14_11580 ftsE ftsE A9D14_11190 A9D14_11190 A9D14_10650 A9D14_10650 ccmA ccmA A9D14_09845 A9D14_09845 A9D14_09635 A9D14_09635 atpD atpD A9D14_08770 A9D14_08770 A9D14_08740 A9D14_08740 A9D14_08595 A9D14_08595 A9D14_08535 A9D14_08535 A9D14_08450 A9D14_08450 GCA_001661675_01664 GCA_001661675_01664 A9D14_07815 A9D14_07815 radA radA A9D14_07315 A9D14_07315 A9D14_06985 A9D14_06985 fliI fliI A9D14_06875 A9D14_06875 A9D14_06560 A9D14_06560 A9D14_06490 A9D14_06490 A9D14_06480 A9D14_06480 A9D14_06315 A9D14_06315 A9D14_06115 A9D14_06115 GCA_001661675_01187 GCA_001661675_01187 A9D14_05920 A9D14_05920 GCA_001661675_01151 GCA_001661675_01151 A9D14_05050 A9D14_05050 recA recA lon lon dnaX dnaX pstB pstB A9D14_04250 A9D14_04250 A9D14_03615 A9D14_03615 A9D14_03370 A9D14_03370 A9D14_03355 A9D14_03355 A9D14_03160 A9D14_03160 A9D14_03015 A9D14_03015 A9D14_02855 A9D14_02855 clpB clpB A9D14_02505 A9D14_02505 A9D14_02470 A9D14_02470 lolD lolD A9D14_01160 A9D14_01160 A9D14_01035 A9D14_01035 A9D14_00900 A9D14_00900 A9D14_00885 A9D14_00885 A9D14_00835 A9D14_00835 A9D14_00690 A9D14_00690 ruvB ruvB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
clpXUnannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (418 aa)
GCA_001661675_03724Unannotated protein. (242 aa)
A9D14_18305Unannotated protein. (670 aa)
A9D14_18215Unannotated protein. (926 aa)
atpD-2Unannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (471 aa)
GCA_001661675_03527Unannotated protein. (242 aa)
A9D14_16105Unannotated protein. (590 aa)
GCA_001661675_03107Unannotated protein. (259 aa)
A9D14_15085Unannotated protein. (268 aa)
GCA_001661675_02857Unannotated protein. (508 aa)
A9D14_14000Unannotated protein. (282 aa)
A9D14_13650Unannotated protein; Belongs to the ClpA/ClpB family. (798 aa)
rhoUnannotated protein; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (417 aa)
A9D14_13080Unannotated protein. (495 aa)
A9D14_12900Unannotated protein. (573 aa)
A9D14_12805Unannotated protein. (344 aa)
A9D14_12665Unannotated protein. (502 aa)
A9D14_12505Unannotated protein. (278 aa)
ftsHUnannotated protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (645 aa)
A9D14_12205Unannotated protein. (615 aa)
A9D14_12120Unannotated protein. (289 aa)
A9D14_11875Unannotated protein; Belongs to the AAA ATPase family. (770 aa)
A9D14_11580Unannotated protein. (215 aa)
ftsEUnannotated protein; Part of the ABC transporter FtsEX involved in cellular division. (284 aa)
A9D14_11190Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (506 aa)
A9D14_10650Unannotated protein. (209 aa)
ccmAUnannotated protein; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (202 aa)
A9D14_09845Unannotated protein. (557 aa)
A9D14_09635Unannotated protein. (470 aa)
atpDUnannotated protein; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (491 aa)
A9D14_08770Unannotated protein. (440 aa)
A9D14_08740Unannotated protein. (526 aa)
A9D14_08595Unannotated protein. (588 aa)
A9D14_08535Unannotated protein. (599 aa)
A9D14_08450Unannotated protein. (348 aa)
GCA_001661675_01664Unannotated protein. (272 aa)
A9D14_07815Unannotated protein. (281 aa)
radAUnannotated protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (459 aa)
A9D14_07315Unannotated protein. (559 aa)
A9D14_06985Unannotated protein. (621 aa)
fliIUnannotated protein. (442 aa)
A9D14_06875Unannotated protein. (439 aa)
A9D14_06560Unannotated protein. (242 aa)
A9D14_06490Unannotated protein. (460 aa)
A9D14_06480Unannotated protein. (482 aa)
A9D14_06315Unannotated protein; Belongs to the ABC transporter superfamily. (329 aa)
A9D14_06115Unannotated protein. (327 aa)
GCA_001661675_01187Unannotated protein. (340 aa)
A9D14_05920Unannotated protein. (459 aa)
GCA_001661675_01151Unannotated protein. (242 aa)
A9D14_05050Unannotated protein. (259 aa)
recAUnannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (356 aa)
lonUnannotated protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (795 aa)
dnaXUnannotated protein; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (614 aa)
pstBUnannotated protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (272 aa)
A9D14_04250Unannotated protein. (255 aa)
A9D14_03615Unannotated protein. (251 aa)
A9D14_03370Unannotated protein. (605 aa)
A9D14_03355Unannotated protein; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. (432 aa)
A9D14_03160Unannotated protein. (461 aa)
A9D14_03015Unannotated protein. (727 aa)
A9D14_02855Unannotated protein. (320 aa)
clpBUnannotated protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (859 aa)
A9D14_02505Unannotated protein. (303 aa)
A9D14_02470Unannotated protein. (729 aa)
lolDUnannotated protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (232 aa)
A9D14_01160Unannotated protein. (457 aa)
A9D14_01035Unannotated protein. (242 aa)
A9D14_00900Unannotated protein. (268 aa)
A9D14_00885Unannotated protein. (289 aa)
A9D14_00835Unannotated protein. (851 aa)
A9D14_00690Unannotated protein. (977 aa)
ruvBUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (343 aa)
Your Current Organism:
Croceicoccus marinus
NCBI taxonomy Id: 450378
Other names: CGMCC 1.6776, Croceicoccus marinus Xu et al. 2009 emend. Huang et al. 2015, JCM 14846, Sphingomonadaceae bacterium E4A9, strain E4A9
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