STRINGSTRING
Aasi_0943 Aasi_0943 Aasi_0999 Aasi_0999 gyrB gyrB Aasi_1160 Aasi_1160 mutL mutL Aasi_1629 Aasi_1629 Aasi_0648 Aasi_0648
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Aasi_0943Hypothetical protein; PFAM: PF01609, Transposase, IS4-like. (603 aa)
Aasi_0999Hypothetical protein; PFAM: PF01609, Transposase, IS4-like. (2272 aa)
gyrBHypothetical protein; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (651 aa)
Aasi_1160Hypothetical protein; PROSITE: PS01150, NADH dehydrogenase (ubiquinone), 20 kDa subunit; PANTHER: PTHR11995:SF2, NADH dehydrogenase (ubiquinone), 20 kDa subunit;PTHR11995, [NiFe]-hydrogenase-3-type complex, small subunit/NADH:quinone oxidoreductase, subunit NuoB; PFAM: PF01058, NADH ubiquinone oxidoreductase, 20 kDa subunit; TIGRFAMS: TIGR01957, NADH dehydrogenase (ubiquinone), 20 kDa subunit. (2303 aa)
mutLHypothetical protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (628 aa)
Aasi_1629Hypothetical protein. (2279 aa)
Aasi_0648Hypothetical protein; PRINTS: PR01590, Helix-turn-helix, Fis-type; PROSITE: PS00688, RNA polymerase sigma factor 54, interaction;PS00676, RNA polymerase sigma factor 54, interaction;PS00675, RNA polymerase sigma factor 54, interaction; PROFILE: PS50045, RNA polymerase sigma factor 54, interaction; PFAM: PF00158, RNA polymerase sigma factor 54, interaction;PF02954, Helix-turn-helix, Fis-type; SUPERFAMILY: SSF46689, Homeodomain-like; SMART: SM00382, AAA+ ATPase, core. (626 aa)
Your Current Organism:
Amoebophilus asiaticus
NCBI taxonomy Id: 452471
Other names: C. Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus 5a2, Candidatus Amoebophilus asiaticus str. 5a2, Candidatus Amoebophilus asiaticus strain 5a2
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