(35 nodes) Catalytic step 2 spliceosome network (Trichoderma atroviride)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	G9NL25_HYPAI	JAB_MPN domain-containing protein. (2328 aa)
	G9NJZ7_HYPAI	Sm domain-containing protein. (90 aa)
	G9NJZ6_HYPAI	Uncharacterized protein. (282 aa)
	G9NJE6_HYPAI	RRM domain-containing protein. (148 aa)
	G9NHN1_HYPAI	Uncharacterized protein. (285 aa)
	G9P6G8_HYPAI	Uncharacterized protein. (688 aa)
	G9P5V0_HYPAI	Sm domain-containing protein. (216 aa)
	G9P5A9_HYPAI	Uncharacterized protein. (217 aa)
	G9P448_HYPAI	Uncharacterized protein. (975 aa)
	G9P874_HYPAI	Small nuclear ribonucleoprotein Sm D2. (117 aa)
	G9P3A5_HYPAI	Sm domain-containing protein. (139 aa)
	G9P2Z7_HYPAI	Uncharacterized protein. (527 aa)
	G9P2M3_HYPAI	RRM domain-containing protein. (341 aa)
	G9NYA1_HYPAI	WD_REPEATS_REGION domain-containing protein. (354 aa)
	G9NWB8_HYPAI	Matrin-type domain-containing protein. (238 aa)
	G9NUL3_HYPAI	Uncharacterized protein. (243 aa)
	G9NU24_HYPAI	PSP domain-containing protein. (416 aa)
	G9NSH8_HYPAI	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	G9NQC9_HYPAI	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome. (1439 aa)
	G9NPE0_HYPAI	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (162 aa)
	G9NMH7_HYPAI	RRM domain-containing protein. (116 aa)
	G9NMB3_HYPAI	Uncharacterized protein. (626 aa)
	G9P8H9_HYPAI	TOG domain-containing protein. (1218 aa)
	G9P8P2_HYPAI	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	G9P9C4_HYPAI	Small nuclear ribonucleoprotein G. (83 aa)
	G9PAK8_HYPAI	WD_REPEATS_REGION domain-containing protein. (528 aa)
	G9PBB6_HYPAI	Uncharacterized protein. (929 aa)
	G9PBN9_HYPAI	Uncharacterized protein. (280 aa)
	G9PBP8_HYPAI	Tr-type G domain-containing protein. (983 aa)
	G9NF39_HYPAI	Uncharacterized protein. (446 aa)
	G9NF44_HYPAI	Uncharacterized protein. (299 aa)
	G9NF73_HYPAI	WD_REPEATS_REGION domain-containing protein. (359 aa)
	G9NHI5_HYPAI	WD_REPEATS_REGION domain-containing protein. (465 aa)
	G9NM55_HYPAI	Pinin_SDK_memA domain-containing protein. (302 aa)

Your Current Organism:

Trichoderma atroviride

NCBI taxonomy Id: 452589
Other names: T. atroviride IMI 206040, Trichoderma atroviride IMI 206040

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
G9NF39_HYPAI	G9P448_HYPAI	G9NF39	G9P448	Uncharacterized protein.	Uncharacterized protein.	0.427
G9NF39_HYPAI	G9P6G8_HYPAI	G9NF39	G9P6G8	Uncharacterized protein.	Uncharacterized protein.	0.405
G9NF44_HYPAI	G9NHI5_HYPAI	G9NF44	G9NHI5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.990
G9NF44_HYPAI	G9NJE6_HYPAI	G9NF44	G9NJE6	Uncharacterized protein.	RRM domain-containing protein.	0.918
G9NF44_HYPAI	G9NJZ6_HYPAI	G9NF44	G9NJZ6	Uncharacterized protein.	Uncharacterized protein.	0.800
G9NF44_HYPAI	G9NJZ7_HYPAI	G9NF44	G9NJZ7	Uncharacterized protein.	Sm domain-containing protein.	0.910
G9NF44_HYPAI	G9NL25_HYPAI	G9NF44	G9NL25	Uncharacterized protein.	JAB_MPN domain-containing protein.	0.956
G9NF44_HYPAI	G9NMB3_HYPAI	G9NF44	G9NMB3	Uncharacterized protein.	Uncharacterized protein.	0.910
G9NF44_HYPAI	G9NPE0_HYPAI	G9NF44	G9NPE0	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.948
G9NF44_HYPAI	G9NQC9_HYPAI	G9NF44	G9NQC9	Uncharacterized protein.	Pre-mRNA-splicing factor; Involved in mRNA splicing where it associates with cdc5 and the other cwf proteins as part of the spliceosome.	0.888
G9NF44_HYPAI	G9NSH8_HYPAI	G9NF44	G9NSH8	Uncharacterized protein.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.892
G9NF44_HYPAI	G9NU24_HYPAI	G9NF44	G9NU24	Uncharacterized protein.	PSP domain-containing protein.	0.617
G9NF44_HYPAI	G9NUL3_HYPAI	G9NF44	G9NUL3	Uncharacterized protein.	Uncharacterized protein.	0.947
G9NF44_HYPAI	G9NWB8_HYPAI	G9NF44	G9NWB8	Uncharacterized protein.	Matrin-type domain-containing protein.	0.668
G9NF44_HYPAI	G9NYA1_HYPAI	G9NF44	G9NYA1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.638
G9NF44_HYPAI	G9P2M3_HYPAI	G9NF44	G9P2M3	Uncharacterized protein.	RRM domain-containing protein.	0.939
G9NF44_HYPAI	G9P2Z7_HYPAI	G9NF44	G9P2Z7	Uncharacterized protein.	Uncharacterized protein.	0.681
G9NF44_HYPAI	G9P448_HYPAI	G9NF44	G9P448	Uncharacterized protein.	Uncharacterized protein.	0.997
G9NF44_HYPAI	G9P5A9_HYPAI	G9NF44	G9P5A9	Uncharacterized protein.	Uncharacterized protein.	0.915
G9NF44_HYPAI	G9P5V0_HYPAI	G9NF44	G9P5V0	Uncharacterized protein.	Sm domain-containing protein.	0.819