STRINGSTRING
Oter_0728 Oter_0728 cmk cmk der der Oter_3021 Oter_3021 Oter_3791 Oter_3791 Oter_3847 Oter_3847 smc smc
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Oter_0728PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: pat:Patl_3469 pseudouridine synthase, Rsu; Belongs to the pseudouridine synthase RsuA family. (237 aa)
cmkPFAM: cytidylate kinase region; KEGG: rxy:Rxyl_1440 cytidylate kinase. (225 aa)
derSmall GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (501 aa)
Oter_3021Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (318 aa)
Oter_3791PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: ttj:TTHA0219 ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family. (266 aa)
Oter_3847Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves. (287 aa)
smcChromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1301 aa)
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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