STRINGSTRING
rpoN-2 rpoN-2 BAI96017.1 BAI96017.1 BAI96018.1 BAI96018.1 nifA nifA miaA miaA hflX hflX hfq hfq BAI96505.1 BAI96505.1 BAI96506.1 BAI96506.1 glnG glnG glnL glnL BAI96509.1 BAI96509.1 hydG hydG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoN-2RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (504 aa)
BAI96017.1Putative Rieske protein; Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit. (430 aa)
BAI96018.1Fis-family / transcriptional regulator containing an AAA-type ATPase domain and a DNA-binding domain. (579 aa)
nifANif-specific regulatory protein; Transcriptional regulator containing an AAA-type ATPase domain and a DNA-binding domain. (555 aa)
miaAtRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (314 aa)
hflXGTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. (443 aa)
hfqHost factor-I protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (164 aa)
BAI96505.1NtrC family / response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (457 aa)
BAI96506.1Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation. (754 aa)
glnGTwo-component system response regulator GnG/NtrC; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (481 aa)
glnLTwo-component system histidine kinase GlnL/NtrB; NtrC family, nitrogen regulation sensor histidine kinase GlnL. (369 aa)
BAI96509.1tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (339 aa)
hydGTwo-component system response regulator HydG; NtrC family / response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (481 aa)
Your Current Organism:
Sphingobium japonicum
NCBI taxonomy Id: 452662
Other names: S. japonicum UT26S, Sphingobium japonicum UT26, Sphingobium japonicum UT26S, Sphingobium japonicum str. UT26S, Sphingobium japonicum strain UT26S
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