(54 nodes) rRNA binding, and Organellar large ribosomal subunit network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MTZ4	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (319 aa)
	A0A0E0MZA0	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (278 aa)
	A0A0E0MZM9	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (135 aa)
	A0A0E0N241	Uncharacterized protein. (97 aa)
	A0A0E0N687	Uncharacterized protein. (86 aa)
	A0A0E0N6Z6	Uncharacterized protein. (195 aa)
	A0A0E0N9I7	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (273 aa)
	A0A0E0NBE3	Uncharacterized protein. (222 aa)
	A0A0E0NCM6	Uncharacterized protein. (214 aa)
	A0A0E0NFP3	Uncharacterized protein. (211 aa)
	A0A0E0NIK4	Uncharacterized protein. (234 aa)
	A0A0E0NN09	RIBOSOMAL_L9 domain-containing protein. (201 aa)
	A0A0E0NNZ0	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (210 aa)
	A0A0E0NP20	Uncharacterized protein. (279 aa)
	A0A0E0NSW0	Uncharacterized protein. (313 aa)
	A0A0E0NTI2	Uncharacterized protein. (220 aa)
	A0A0E0NV64	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (226 aa)
	A0A0E0NY76	Ribosomal_TL5_C domain-containing protein. (273 aa)
	A0A0E0P1T3	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (223 aa)
	A0A0E0P2Y9	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (99 aa)
	A0A0E0P314	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (255 aa)
	A0A0E0P345	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (142 aa)
	A0A0E0PGB4	Uncharacterized protein. (137 aa)
	A0A0E0PJF9	Uncharacterized protein. (301 aa)
	A0A0E0PLY2	Ribosomal protein; Belongs to the universal ribosomal protein uL1 family. (343 aa)
	A0A0E0PNC4	Uncharacterized protein. (124 aa)
	A0A0E0PNJ9	Uncharacterized protein. (173 aa)
	A0A0E0PPW7	Uncharacterized protein. (140 aa)
	A0A0E0PQ85	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (121 aa)
	A0A0E0PQ91	Uncharacterized protein. (206 aa)
	A0A0E0PR33	Uncharacterized protein. (250 aa)
	A0A0E0PWW2	Uncharacterized protein. (537 aa)
	A0A0E0Q1R5	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family. (190 aa)
	A0A0E0Q303	Uncharacterized protein. (454 aa)
	A0A0E0Q9J4	Uncharacterized protein. (204 aa)
	A0A0E0QDV2	Uncharacterized protein. (604 aa)
	A0A0E0QEP0	Uncharacterized protein. (143 aa)
	A0A0E0QH78	Ribosomal_L18e/L15P domain-containing protein. (265 aa)
	A0A0E0QHZ9	Uncharacterized protein. (107 aa)
	A0A0E0QKF2	Ribosomal_L6 domain-containing protein; Belongs to the universal ribosomal protein uL6 family. (103 aa)
	A0A0E0QQF0	Ribosomal_L2_C domain-containing protein. (100 aa)
	A0A0E0QSZ4	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (161 aa)
	A0A0E0QTA1	Uncharacterized protein. (136 aa)
	A0A0E0QWU1	Ribosomal_S10 domain-containing protein. (130 aa)
	A0A0E0R064	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (209 aa)
	A0A0E0R8E2	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (199 aa)
	A0A0E0RA77	Uncharacterized protein. (286 aa)
	A0A0E0RHF3	Uncharacterized protein. (197 aa)
	A0A0E0RI16	Ribosomal_L2 domain-containing protein. (282 aa)
	rpl22	50S ribosomal protein L22, chloroplastic; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome; Belongs to the universal ribosomal protein uL22 family. (149 aa)
	rpl16	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (120 aa)
	rps2	30S ribosomal protein S2, chloroplastic. (236 aa)
	rpl20	50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)
	rpl36	50S ribosomal protein L36, chloroplastic. (37 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0MTZ4	A0A0E0MZA0	A0A0E0MTZ4	A0A0E0MZA0	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.992
A0A0E0MTZ4	A0A0E0MZM9	A0A0E0MTZ4	A0A0E0MZM9	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.992
A0A0E0MTZ4	A0A0E0N241	A0A0E0MTZ4	A0A0E0N241	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.989
A0A0E0MTZ4	A0A0E0N687	A0A0E0MTZ4	A0A0E0N687	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.991
A0A0E0MTZ4	A0A0E0N6Z6	A0A0E0MTZ4	A0A0E0N6Z6	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.994
A0A0E0MTZ4	A0A0E0N9I7	A0A0E0MTZ4	A0A0E0N9I7	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.937
A0A0E0MTZ4	A0A0E0NBE3	A0A0E0MTZ4	A0A0E0NBE3	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.990
A0A0E0MTZ4	A0A0E0NCM6	A0A0E0MTZ4	A0A0E0NCM6	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.990
A0A0E0MTZ4	A0A0E0NFP3	A0A0E0MTZ4	A0A0E0NFP3	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.990
A0A0E0MTZ4	A0A0E0NIK4	A0A0E0MTZ4	A0A0E0NIK4	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.983
A0A0E0MTZ4	A0A0E0NN09	A0A0E0MTZ4	A0A0E0NN09	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	RIBOSOMAL_L9 domain-containing protein.	0.990
A0A0E0MTZ4	A0A0E0NNZ0	A0A0E0MTZ4	A0A0E0NNZ0	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.993
A0A0E0MTZ4	A0A0E0NP20	A0A0E0MTZ4	A0A0E0NP20	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.994
A0A0E0MTZ4	A0A0E0NSW0	A0A0E0MTZ4	A0A0E0NSW0	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.978
A0A0E0MTZ4	A0A0E0NTI2	A0A0E0MTZ4	A0A0E0NTI2	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.989
A0A0E0MTZ4	A0A0E0NV64	A0A0E0MTZ4	A0A0E0NV64	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.982
A0A0E0MTZ4	A0A0E0NY76	A0A0E0MTZ4	A0A0E0NY76	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal_TL5_C domain-containing protein.	0.992
A0A0E0MTZ4	A0A0E0P1T3	A0A0E0MTZ4	A0A0E0P1T3	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.991
A0A0E0MTZ4	A0A0E0P2Y9	A0A0E0MTZ4	A0A0E0P2Y9	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.991
A0A0E0MTZ4	A0A0E0P314	A0A0E0MTZ4	A0A0E0P314	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.984