5 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NJZ6	Uncharacterized protein. (928 aa)
	A0A0E0NSC2	J domain-containing protein. (190 aa)
	A0A0E0PIB2	Uncharacterized protein. (853 aa)
	A0A0E0PY01	Uncharacterized protein. (364 aa)
	A0A0E0R546	Uncharacterized protein. (149 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0NJZ6	A0A0E0NSC2	Uncharacterized protein.	J domain-containing protein.	0.932
A0A0E0NJZ6	A0A0E0PIB2	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A0E0NJZ6	A0A0E0PY01	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A0E0NJZ6	A0A0E0R546	Uncharacterized protein.	Uncharacterized protein.	0.910
A0A0E0NSC2	A0A0E0NJZ6	J domain-containing protein.	Uncharacterized protein.	0.932
A0A0E0NSC2	A0A0E0PIB2	J domain-containing protein.	Uncharacterized protein.	0.787
A0A0E0NSC2	A0A0E0PY01	J domain-containing protein.	Uncharacterized protein.	0.802
A0A0E0NSC2	A0A0E0R546	J domain-containing protein.	Uncharacterized protein.	0.804
A0A0E0PIB2	A0A0E0NJZ6	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A0E0PIB2	A0A0E0NSC2	Uncharacterized protein.	J domain-containing protein.	0.787
A0A0E0PIB2	A0A0E0PY01	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A0E0PIB2	A0A0E0R546	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A0E0PY01	A0A0E0NJZ6	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A0E0PY01	A0A0E0NSC2	Uncharacterized protein.	J domain-containing protein.	0.802
A0A0E0PY01	A0A0E0PIB2	Uncharacterized protein.	Uncharacterized protein.	0.846
A0A0E0PY01	A0A0E0R546	Uncharacterized protein.	Uncharacterized protein.	0.796
A0A0E0R546	A0A0E0NJZ6	Uncharacterized protein.	Uncharacterized protein.	0.910
A0A0E0R546	A0A0E0NSC2	Uncharacterized protein.	J domain-containing protein.	0.804
A0A0E0R546	A0A0E0PIB2	Uncharacterized protein.	Uncharacterized protein.	0.823
A0A0E0R546	A0A0E0PY01	Uncharacterized protein.	Uncharacterized protein.	0.796