(5 nodes) Mixed, incl. FF domain, and Ubiquitin-like modifier Hub1/Ubl5 network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NDC6	Uncharacterized protein. (350 aa)
	A0A0E0P3H5	Uncharacterized protein. (886 aa)
	A0A0E0QMP1	Uncharacterized protein. (367 aa)
	A0A0E0R0J9	Uncharacterized protein. (1079 aa)
	A0A0E0R441	Ubiquitin-like domain-containing protein. (73 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0NDC6	A0A0E0P3H5	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A0E0NDC6	A0A0E0QMP1	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A0E0NDC6	A0A0E0R0J9	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A0E0NDC6	A0A0E0R441	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.885
A0A0E0P3H5	A0A0E0NDC6	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A0E0P3H5	A0A0E0QMP1	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A0E0P3H5	A0A0E0R0J9	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A0E0P3H5	A0A0E0R441	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.910
A0A0E0QMP1	A0A0E0NDC6	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A0E0QMP1	A0A0E0P3H5	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A0E0QMP1	A0A0E0R0J9	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0E0QMP1	A0A0E0R441	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.974
A0A0E0R0J9	A0A0E0NDC6	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A0E0R0J9	A0A0E0P3H5	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A0E0R0J9	A0A0E0QMP1	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0E0R0J9	A0A0E0R441	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.889
A0A0E0R441	A0A0E0NDC6	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.885
A0A0E0R441	A0A0E0P3H5	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.910
A0A0E0R441	A0A0E0QMP1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.974
A0A0E0R441	A0A0E0R0J9	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.889