(106 nodes) Homology Directed Repair, and Mismatch repair network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Pss	11S seed storage protein. (377 aa)
	A0A0E0MQD1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2748 aa)
	A0A0E0MR78	Uncharacterized protein. (214 aa)
	A0A0E0MS50	DUF1767 domain-containing protein. (437 aa)
	A0A0E0MS78	DNA_MISMATCH_REPAIR_2 domain-containing protein. (1224 aa)
	A0A0E0MWP0	Piezo_RRas_bdg domain-containing protein. (1713 aa)
	A0A0E0MYE7	RECA_2 domain-containing protein. (398 aa)
	A0A0E0MYQ9	Helicase ATP-binding domain-containing protein. (787 aa)
	A0A0E0MZR8	Uncharacterized protein. (377 aa)
	A0A0E0N097	3'-5' exonuclease domain-containing protein. (357 aa)
	A0A0E0N218	DNA_pol3_gamma3 domain-containing protein. (1022 aa)
	A0A0E0N2N3	UmuC domain-containing protein. (634 aa)
	A0A0E0N385	Uncharacterized protein. (801 aa)
	A0A0E0N5P7	53EXOc domain-containing protein. (412 aa)
	A0A0E0N6C2	Uncharacterized protein; Belongs to the RecA family. (429 aa)
	A0A0E0N7G2	BRCT domain-containing protein. (664 aa)
	A0A0E0N7L5	ERCC4 domain-containing protein. (660 aa)
	A0A0E0N7V1	DNA_mis_repair domain-containing protein. (720 aa)
	A0A0E0ND02	Uncharacterized protein. (165 aa)
	A0A0E0NET5	Toprim domain-containing protein. (1051 aa)
	A0A0E0NGG8	RECA_2 domain-containing protein. (292 aa)
	A0A0E0NH59	Uncharacterized protein. (863 aa)
	A0A0E0NJU4	Uncharacterized protein. (729 aa)
	A0A0E0NLL5	AAA domain-containing protein. (346 aa)
	A0A0E0NLR7	Uncharacterized protein. (322 aa)
	A0A0E0NMF4	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (263 aa)
	A0A0E0NNK7	NAC domain-containing protein. (297 aa)
	A0A0E0NQ37	DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family. (922 aa)
	A0A0E0NS98	Uncharacterized protein. (675 aa)
	A0A0E0NSS6	AAA domain-containing protein. (1233 aa)
	A0A0E0NSV0	AAA domain-containing protein. (969 aa)
	A0A0E0NTZ2	Uncharacterized protein. (1052 aa)
	A0A0E0NUX8	Uncharacterized protein; Belongs to the rad9 family. (447 aa)
	A0A0E0NW67	Pectinesterase. (603 aa)
	A0A0E0NWW7	Uncharacterized protein. (860 aa)
	A0A0E0NY93	UmuC domain-containing protein. (662 aa)
	A0A0E0NYP5	Uncharacterized protein; Belongs to the RecA family. (447 aa)
	A0A0E0P2E5	AAA domain-containing protein. (353 aa)
	A0A0E0P3J8	Uncharacterized protein. (639 aa)
	A0A0E0P437	Uncharacterized protein. (547 aa)
	A0A0E0P630	Uncharacterized protein. (295 aa)
	A0A0E0P9D8	Uncharacterized protein. (1043 aa)
	A0A0E0PAS3	Uncharacterized protein. (939 aa)
	A0A0E0PBB9	DNA_MISMATCH_REPAIR_2 domain-containing protein. (1196 aa)
	A0A0E0PBI1	Uncharacterized protein. (629 aa)
	A0A0E0PBU4	Checkpoint protein; Belongs to the HUS1 family. (354 aa)
	A0A0E0PCU4	AAA domain-containing protein. (344 aa)
	A0A0E0PDB1	Uncharacterized protein. (1248 aa)
	A0A0E0PEL0	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (682 aa)
	A0A0E0PGS8	Uncharacterized protein. (404 aa)
	A0A0E0PHG3	BRCT domain-containing protein. (1389 aa)
	A0A0E0PHL3	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (866 aa)
	A0A0E0PI54	zf-GRF domain-containing protein. (172 aa)
	A0A0E0PJZ0	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (942 aa)
	A0A0E0PP71	Uncharacterized protein. (510 aa)
	A0A0E0PPH3	DNA_MISMATCH_REPAIR_2 domain-containing protein. (686 aa)
	A0A0E0PPV2	Uncharacterized protein. (987 aa)
	A0A0E0PQ99	DNA_pol3_gamma3 domain-containing protein. (1083 aa)
	A0A0E0PQJ8	XPGI domain-containing protein. (256 aa)
	A0A0E0Q1X7	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1124 aa)
	A0A0E0Q2T1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2739 aa)
	A0A0E0Q5J3	Uncharacterized protein. (347 aa)
	A0A0E0Q8C0	Uncharacterized protein. (779 aa)
	A0A0E0Q8G7	Uncharacterized protein. (1139 aa)
	A0A0E0QBV2	Uncharacterized protein. (598 aa)
	A0A0E0QCI3	Uncharacterized protein. (1754 aa)
	A0A0E0QD17	Uncharacterized protein. (1335 aa)
	A0A0E0QD66	Uncharacterized protein. (173 aa)
	A0A0E0QD83	Uncharacterized protein. (641 aa)
	A0A0E0QDQ7	AAA domain-containing protein. (733 aa)
	A0A0E0QDZ6	Uncharacterized protein. (838 aa)
	A0A0E0QF27	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (589 aa)
	A0A0E0QJ00	Uncharacterized protein. (472 aa)
	A0A0E0QJR3	Pectinesterase. (689 aa)
	A0A0E0QMP6	RECA_2 domain-containing protein. (283 aa)
	A0A0E0QNC8	WD_REPEATS_REGION domain-containing protein. (1133 aa)
	A0A0E0QPE4	Uncharacterized protein. (110 aa)
	A0A0E0QR90	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1265 aa)
	A0A0E0QU05	Uncharacterized protein. (629 aa)
	A0A0E0QUU0	Helicase ATP-binding domain-containing protein. (1334 aa)
	A0A0E0QUU2	MutL_C domain-containing protein. (1116 aa)
	A0A0E0QVG6	Protein kinase domain-containing protein. (788 aa)
	A0A0E0R0M6	FHA domain-containing protein. (548 aa)
	A0A0E0R0P3	DNA ligase. (912 aa)
	A0A0E0R2U2	Uncharacterized protein. (451 aa)
	A0A0E0R449	Uncharacterized protein; Belongs to the RecA family. (319 aa)
	A0A0E0R4Z1	Uncharacterized protein. (1454 aa)
	A0A0E0R565	Uncharacterized protein. (957 aa)
	A0A0E0R5K4	DUF223 domain-containing protein. (362 aa)
	A0A0E0R6A8	DNA_pol3_gamma3 domain-containing protein. (1183 aa)
	A0A0E0R7A1	Uncharacterized protein; Belongs to the RecA family. (430 aa)
	A0A0E0R9X8	Replication factor C subunit 1. (987 aa)
	A0A0E0RA82	Uncharacterized protein. (1198 aa)
	A0A0E0RAG3	Rep_fac-A_C domain-containing protein. (458 aa)
	A0A0E0RAW8	DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination; Belongs to the RecA family. RAD51 subfamily. (335 aa)
	A0A0E0RB58	Uncharacterized protein. (197 aa)
	A0A0E0RBX0	Uncharacterized protein. (101 aa)
	A0A0E0RBX6	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (588 aa)
	A0A0E0RDP1	RECA_2 domain-containing protein. (411 aa)
	A0A0E0REJ8	Ubiquitin-like domain-containing protein. (792 aa)
	A0A0E0RF42	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	A0A0E0RFG3	Uncharacterized protein. (2385 aa)
	A0A0E0RG45	AAA domain-containing protein. (963 aa)
	A0A0E0RHI8	Uncharacterized protein; Belongs to the RecA family. (120 aa)
	A0A0E0RHQ7	Uncharacterized protein. (321 aa)
	A0A0E0RK65	Uncharacterized protein. (647 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0MQD1	A0A0E0MR78	A0A0E0MQD1	A0A0E0MR78	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.684
A0A0E0MQD1	A0A0E0MS50	A0A0E0MQD1	A0A0E0MS50	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DUF1767 domain-containing protein.	0.806
A0A0E0MQD1	A0A0E0MS78	A0A0E0MQD1	A0A0E0MS78	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.741
A0A0E0MQD1	A0A0E0MWP0	A0A0E0MQD1	A0A0E0MWP0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Piezo_RRas_bdg domain-containing protein.	0.636
A0A0E0MQD1	A0A0E0MYE7	A0A0E0MQD1	A0A0E0MYE7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	RECA_2 domain-containing protein.	0.848
A0A0E0MQD1	A0A0E0MYQ9	A0A0E0MQD1	A0A0E0MYQ9	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Helicase ATP-binding domain-containing protein.	0.854
A0A0E0MQD1	A0A0E0MZR8	A0A0E0MQD1	A0A0E0MZR8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.976
A0A0E0MQD1	A0A0E0N097	A0A0E0MQD1	A0A0E0N097	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	3'-5' exonuclease domain-containing protein.	0.995
A0A0E0MQD1	A0A0E0N218	A0A0E0MQD1	A0A0E0N218	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA_pol3_gamma3 domain-containing protein.	0.762
A0A0E0MQD1	A0A0E0N2N3	A0A0E0MQD1	A0A0E0N2N3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	UmuC domain-containing protein.	0.771
A0A0E0MQD1	A0A0E0N385	A0A0E0MQD1	A0A0E0N385	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.960
A0A0E0MQD1	A0A0E0N5P7	A0A0E0MQD1	A0A0E0N5P7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	53EXOc domain-containing protein.	0.768
A0A0E0MQD1	A0A0E0N6C2	A0A0E0MQD1	A0A0E0N6C2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the RecA family.	0.746
A0A0E0MQD1	A0A0E0N7G2	A0A0E0MQD1	A0A0E0N7G2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	BRCT domain-containing protein.	0.963
A0A0E0MQD1	A0A0E0N7L5	A0A0E0MQD1	A0A0E0N7L5	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	ERCC4 domain-containing protein.	0.835
A0A0E0MQD1	A0A0E0N7V1	A0A0E0MQD1	A0A0E0N7V1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DNA_mis_repair domain-containing protein.	0.856
A0A0E0MQD1	A0A0E0ND02	A0A0E0MQD1	A0A0E0ND02	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.642
A0A0E0MQD1	A0A0E0NET5	A0A0E0MQD1	A0A0E0NET5	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Toprim domain-containing protein.	0.642
A0A0E0MQD1	A0A0E0NGG8	A0A0E0MQD1	A0A0E0NGG8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	RECA_2 domain-containing protein.	0.884
A0A0E0MQD1	A0A0E0NH59	A0A0E0MQD1	A0A0E0NH59	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.757