(11 nodes) Sensing of DNA Double Strand Breaks, and BRCA1-BARD1 complex network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MQD1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2748 aa)
	A0A0E0N097	3'-5' exonuclease domain-containing protein. (357 aa)
	A0A0E0P630	Uncharacterized protein. (295 aa)
	A0A0E0PBI1	Uncharacterized protein. (629 aa)
	A0A0E0PEL0	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (682 aa)
	A0A0E0PPV2	Uncharacterized protein. (987 aa)
	A0A0E0Q2T1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2739 aa)
	A0A0E0QD66	Uncharacterized protein. (173 aa)
	A0A0E0QF27	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (589 aa)
	A0A0E0QJ00	Uncharacterized protein. (472 aa)
	A0A0E0R0M6	FHA domain-containing protein. (548 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MQD1	A0A0E0N097	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	3'-5' exonuclease domain-containing protein.	0.995
A0A0E0MQD1	A0A0E0P630	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.976
A0A0E0MQD1	A0A0E0PBI1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.967
A0A0E0MQD1	A0A0E0PEL0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.990
A0A0E0MQD1	A0A0E0PPV2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.969
A0A0E0MQD1	A0A0E0Q2T1	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.998
A0A0E0MQD1	A0A0E0QD66	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.976
A0A0E0MQD1	A0A0E0QF27	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.990
A0A0E0MQD1	A0A0E0QJ00	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.968
A0A0E0MQD1	A0A0E0R0M6	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	FHA domain-containing protein.	0.997
A0A0E0N097	A0A0E0MQD1	3'-5' exonuclease domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.995
A0A0E0N097	A0A0E0P630	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.841
A0A0E0N097	A0A0E0PBI1	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.902
A0A0E0N097	A0A0E0PEL0	3'-5' exonuclease domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.958
A0A0E0N097	A0A0E0PPV2	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.902
A0A0E0N097	A0A0E0Q2T1	3'-5' exonuclease domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.998
A0A0E0N097	A0A0E0QD66	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.841
A0A0E0N097	A0A0E0QF27	3'-5' exonuclease domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.958
A0A0E0N097	A0A0E0QJ00	3'-5' exonuclease domain-containing protein.	Uncharacterized protein.	0.798
A0A0E0N097	A0A0E0R0M6	3'-5' exonuclease domain-containing protein.	FHA domain-containing protein.	0.991