(5 nodes) Nucleotide-excision repair factor 1 complex, and DNA polymerase binding network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NNF5	ERCC4 domain-containing protein. (1325 aa)
	A0A0E0NUU9	Uncharacterized protein. (1324 aa)
	A0A0E0P0Q6	Uncharacterized protein. (292 aa)
	A0A0E0Q452	Uncharacterized protein. (1489 aa)
	A0A0E0R1G2	HHH_2 domain-containing protein. (339 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0NNF5	A0A0E0NUU9	ERCC4 domain-containing protein.	Uncharacterized protein.	0.934
A0A0E0NNF5	A0A0E0P0Q6	ERCC4 domain-containing protein.	Uncharacterized protein.	0.993
A0A0E0NNF5	A0A0E0Q452	ERCC4 domain-containing protein.	Uncharacterized protein.	0.948
A0A0E0NNF5	A0A0E0R1G2	ERCC4 domain-containing protein.	HHH_2 domain-containing protein.	0.999
A0A0E0NUU9	A0A0E0NNF5	Uncharacterized protein.	ERCC4 domain-containing protein.	0.934
A0A0E0NUU9	A0A0E0P0Q6	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0E0NUU9	A0A0E0Q452	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0E0NUU9	A0A0E0R1G2	Uncharacterized protein.	HHH_2 domain-containing protein.	0.919
A0A0E0P0Q6	A0A0E0NNF5	Uncharacterized protein.	ERCC4 domain-containing protein.	0.993
A0A0E0P0Q6	A0A0E0NUU9	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A0E0P0Q6	A0A0E0Q452	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A0E0P0Q6	A0A0E0R1G2	Uncharacterized protein.	HHH_2 domain-containing protein.	0.993
A0A0E0Q452	A0A0E0NNF5	Uncharacterized protein.	ERCC4 domain-containing protein.	0.948
A0A0E0Q452	A0A0E0NUU9	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A0E0Q452	A0A0E0P0Q6	Uncharacterized protein.	Uncharacterized protein.	0.998
A0A0E0Q452	A0A0E0R1G2	Uncharacterized protein.	HHH_2 domain-containing protein.	0.934
A0A0E0R1G2	A0A0E0NNF5	HHH_2 domain-containing protein.	ERCC4 domain-containing protein.	0.999
A0A0E0R1G2	A0A0E0NUU9	HHH_2 domain-containing protein.	Uncharacterized protein.	0.919
A0A0E0R1G2	A0A0E0P0Q6	HHH_2 domain-containing protein.	Uncharacterized protein.	0.993
A0A0E0R1G2	A0A0E0Q452	HHH_2 domain-containing protein.	Uncharacterized protein.	0.934