(5 nodes) BLOC complex network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NB16	Uncharacterized protein. (121 aa)
	A0A0E0P856	Uncharacterized protein. (500 aa)
	A0A0E0R3B4	Uncharacterized protein. (112 aa)
	A0A0E0RCU0	Uncharacterized protein. (128 aa)
	A0A0E0RGF8	Uncharacterized protein. (419 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0NB16	A0A0E0R3B4	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A0E0NB16	A0A0E0RCU0	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A0E0NB16	A0A0E0RGF8	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A0E0P856	A0A0E0R3B4	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A0E0P856	A0A0E0RCU0	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A0E0P856	A0A0E0RGF8	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A0E0R3B4	A0A0E0NB16	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A0E0R3B4	A0A0E0P856	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A0E0RCU0	A0A0E0NB16	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A0E0RCU0	A0A0E0P856	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A0E0RGF8	A0A0E0NB16	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A0E0RGF8	A0A0E0P856	Uncharacterized protein.	Uncharacterized protein.	0.497