(17 nodes) G0 and Early G1, and E2F transcription factor, CC-MB domain network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MSK5	SANT domain-containing protein. (873 aa)
	A0A0E0MVL2	Uncharacterized protein. (282 aa)
	A0A0E0N0R0	Uncharacterized protein. (285 aa)
	A0A0E0NCY4	CRC domain-containing protein. (456 aa)
	A0A0E0NG17	E2F_TDP domain-containing protein. (481 aa)
	A0A0E0NPT1	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family. (347 aa)
	A0A0E0NYM8	CRC domain-containing protein. (735 aa)
	A0A0E0NYN8	DIRP domain-containing protein. (1220 aa)
	A0A0E0P4I5	E2F_TDP domain-containing protein. (494 aa)
	A0A0E0PTX0	Peptidase_S9 domain-containing protein. (419 aa)
	A0A0E0Q604	Uncharacterized protein. (222 aa)
	A0A0E0QLT1	Uncharacterized protein. (1010 aa)
	A0A0E0QZL8	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family. (346 aa)
	A0A0E0R9B1	RB_A domain-containing protein. (728 aa)
	A0A0E0RE30	E2F_TDP domain-containing protein. (446 aa)
	A0A0E0RJQ8	CRC domain-containing protein. (421 aa)
	A0A0E0RJR0	CRC domain-containing protein. (728 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MSK5	A0A0E0MVL2	SANT domain-containing protein.	Uncharacterized protein.	0.874
A0A0E0MSK5	A0A0E0N0R0	SANT domain-containing protein.	Uncharacterized protein.	0.824
A0A0E0MSK5	A0A0E0NCY4	SANT domain-containing protein.	CRC domain-containing protein.	0.814
A0A0E0MSK5	A0A0E0NG17	SANT domain-containing protein.	E2F_TDP domain-containing protein.	0.872
A0A0E0MSK5	A0A0E0NPT1	SANT domain-containing protein.	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	0.824
A0A0E0MSK5	A0A0E0NYM8	SANT domain-containing protein.	CRC domain-containing protein.	0.814
A0A0E0MSK5	A0A0E0P4I5	SANT domain-containing protein.	E2F_TDP domain-containing protein.	0.872
A0A0E0MSK5	A0A0E0PTX0	SANT domain-containing protein.	Peptidase_S9 domain-containing protein.	0.814
A0A0E0MSK5	A0A0E0Q604	SANT domain-containing protein.	Uncharacterized protein.	0.874
A0A0E0MSK5	A0A0E0QLT1	SANT domain-containing protein.	Uncharacterized protein.	0.956
A0A0E0MSK5	A0A0E0QZL8	SANT domain-containing protein.	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	0.824
A0A0E0MSK5	A0A0E0R9B1	SANT domain-containing protein.	RB_A domain-containing protein.	0.956
A0A0E0MSK5	A0A0E0RE30	SANT domain-containing protein.	E2F_TDP domain-containing protein.	0.872
A0A0E0MSK5	A0A0E0RJQ8	SANT domain-containing protein.	CRC domain-containing protein.	0.814
A0A0E0MSK5	A0A0E0RJR0	SANT domain-containing protein.	CRC domain-containing protein.	0.814
A0A0E0MVL2	A0A0E0MSK5	Uncharacterized protein.	SANT domain-containing protein.	0.874
A0A0E0MVL2	A0A0E0N0R0	Uncharacterized protein.	Uncharacterized protein.	0.633
A0A0E0MVL2	A0A0E0NCY4	Uncharacterized protein.	CRC domain-containing protein.	0.659
A0A0E0MVL2	A0A0E0NG17	Uncharacterized protein.	E2F_TDP domain-containing protein.	0.617
A0A0E0MVL2	A0A0E0NPT1	Uncharacterized protein.	Uncharacterized protein; Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. Belongs to the E2F/DP family.	0.633