(10 nodes) Mixed, incl. DUF3741-associated sequence motif, and PWWP domain containing protein PWWP2-like network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MY16	PWWP domain-containing protein. (774 aa)
	A0A0E0NQ36	GTD-binding domain-containing protein. (759 aa)
	A0A0E0NTE4	Uncharacterized protein. (1046 aa)
	A0A0E0P4E6	Uncharacterized protein. (615 aa)
	A0A0E0PQB5	Uncharacterized protein. (176 aa)
	A0A0E0Q388	Uncharacterized protein. (1090 aa)
	A0A0E0Q407	Uncharacterized protein. (920 aa)
	A0A0E0QA20	SANT domain-containing protein. (935 aa)
	A0A0E0R474	Uncharacterized protein. (629 aa)
	A0A0E0R625	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (643 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MY16	A0A0E0NQ36	PWWP domain-containing protein.	GTD-binding domain-containing protein.	0.411
A0A0E0MY16	A0A0E0NTE4	PWWP domain-containing protein.	Uncharacterized protein.	0.460
A0A0E0MY16	A0A0E0Q388	PWWP domain-containing protein.	Uncharacterized protein.	0.478
A0A0E0MY16	A0A0E0Q407	PWWP domain-containing protein.	Uncharacterized protein.	0.419
A0A0E0MY16	A0A0E0QA20	PWWP domain-containing protein.	SANT domain-containing protein.	0.474
A0A0E0MY16	A0A0E0R474	PWWP domain-containing protein.	Uncharacterized protein.	0.450
A0A0E0MY16	A0A0E0R625	PWWP domain-containing protein.	Uncharacterized protein; Belongs to the disease resistance NB-LRR family.	0.605
A0A0E0NQ36	A0A0E0MY16	GTD-binding domain-containing protein.	PWWP domain-containing protein.	0.411
A0A0E0NQ36	A0A0E0NTE4	GTD-binding domain-containing protein.	Uncharacterized protein.	0.530
A0A0E0NQ36	A0A0E0P4E6	GTD-binding domain-containing protein.	Uncharacterized protein.	0.422
A0A0E0NQ36	A0A0E0PQB5	GTD-binding domain-containing protein.	Uncharacterized protein.	0.410
A0A0E0NQ36	A0A0E0Q388	GTD-binding domain-containing protein.	Uncharacterized protein.	0.496
A0A0E0NQ36	A0A0E0Q407	GTD-binding domain-containing protein.	Uncharacterized protein.	0.443
A0A0E0NQ36	A0A0E0QA20	GTD-binding domain-containing protein.	SANT domain-containing protein.	0.452
A0A0E0NQ36	A0A0E0R625	GTD-binding domain-containing protein.	Uncharacterized protein; Belongs to the disease resistance NB-LRR family.	0.450
A0A0E0NTE4	A0A0E0MY16	Uncharacterized protein.	PWWP domain-containing protein.	0.460
A0A0E0NTE4	A0A0E0NQ36	Uncharacterized protein.	GTD-binding domain-containing protein.	0.530
A0A0E0NTE4	A0A0E0P4E6	Uncharacterized protein.	Uncharacterized protein.	0.436
A0A0E0NTE4	A0A0E0Q407	Uncharacterized protein.	Uncharacterized protein.	0.434
A0A0E0NTE4	A0A0E0R625	Uncharacterized protein.	Uncharacterized protein; Belongs to the disease resistance NB-LRR family.	0.488