(11 nodes) Mixed, incl. Phytanoyl-CoA dioxygenase-like, and Cell-cell adhesion network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MVK0	Uncharacterized protein. (116 aa)
	A0A0E0MX80	Stress-response A/B barrel domain-containing protein. (112 aa)
	A0A0E0MX82	Stress-response A/B barrel domain-containing protein. (113 aa)
	A0A0E0NUB4	VQ domain-containing protein. (215 aa)
	A0A0E0P092	Uncharacterized protein. (281 aa)
	A0A0E0PNV2	Uncharacterized protein. (399 aa)
	A0A0E0Q461	DAO domain-containing protein. (391 aa)
	A0A0E0Q5F4	Uncharacterized protein; Belongs to the peptidase M24B family. (718 aa)
	A0A0E0R1S3	Uncharacterized protein. (336 aa)
	A0A0E0RDX7	Uncharacterized protein. (287 aa)
	A0A0E0RIT1	AMP_N domain-containing protein. (464 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MVK0	A0A0E0MX80	Uncharacterized protein.	Stress-response A/B barrel domain-containing protein.	0.632
A0A0E0MVK0	A0A0E0MX82	Uncharacterized protein.	Stress-response A/B barrel domain-containing protein.	0.632
A0A0E0MVK0	A0A0E0Q461	Uncharacterized protein.	DAO domain-containing protein.	0.632
A0A0E0MX80	A0A0E0MVK0	Stress-response A/B barrel domain-containing protein.	Uncharacterized protein.	0.632
A0A0E0MX80	A0A0E0NUB4	Stress-response A/B barrel domain-containing protein.	VQ domain-containing protein.	0.704
A0A0E0MX80	A0A0E0Q5F4	Stress-response A/B barrel domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.704
A0A0E0MX80	A0A0E0R1S3	Stress-response A/B barrel domain-containing protein.	Uncharacterized protein.	0.632
A0A0E0MX80	A0A0E0RDX7	Stress-response A/B barrel domain-containing protein.	Uncharacterized protein.	0.868
A0A0E0MX80	A0A0E0RIT1	Stress-response A/B barrel domain-containing protein.	AMP_N domain-containing protein.	0.704
A0A0E0MX82	A0A0E0MVK0	Stress-response A/B barrel domain-containing protein.	Uncharacterized protein.	0.632
A0A0E0MX82	A0A0E0NUB4	Stress-response A/B barrel domain-containing protein.	VQ domain-containing protein.	0.704
A0A0E0MX82	A0A0E0Q5F4	Stress-response A/B barrel domain-containing protein.	Uncharacterized protein; Belongs to the peptidase M24B family.	0.704
A0A0E0MX82	A0A0E0R1S3	Stress-response A/B barrel domain-containing protein.	Uncharacterized protein.	0.632
A0A0E0MX82	A0A0E0RDX7	Stress-response A/B barrel domain-containing protein.	Uncharacterized protein.	0.868
A0A0E0MX82	A0A0E0RIT1	Stress-response A/B barrel domain-containing protein.	AMP_N domain-containing protein.	0.704
A0A0E0NUB4	A0A0E0MX80	VQ domain-containing protein.	Stress-response A/B barrel domain-containing protein.	0.704
A0A0E0NUB4	A0A0E0MX82	VQ domain-containing protein.	Stress-response A/B barrel domain-containing protein.	0.704
A0A0E0NUB4	A0A0E0P092	VQ domain-containing protein.	Uncharacterized protein.	0.716
A0A0E0NUB4	A0A0E0PNV2	VQ domain-containing protein.	Uncharacterized protein.	0.716
A0A0E0NUB4	A0A0E0Q461	VQ domain-containing protein.	DAO domain-containing protein.	0.704