(32 nodes) Mixed, incl. Galactose catabolism, and Alpha galactosidase A network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MYG5	Beta-galactosidase. (822 aa)
	A0A0E0N7P6	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. (1084 aa)
	A0A0E0N9N4	Uncharacterized protein. (987 aa)
	A0A0E0NBT1	Beta-galactosidase. (729 aa)
	A0A0E0NFQ9	Uncharacterized protein. (259 aa)
	A0A0E0NGT6	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (378 aa)
	A0A0E0NRP2	Beta-hexosaminidase. (617 aa)
	A0A0E0NS80	Uncharacterized protein. (71 aa)
	A0A0E0NUB1	Alpha-L-AF_C domain-containing protein. (642 aa)
	A0A0E0NVU4	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (400 aa)
	A0A0E0P3I4	Uncharacterized protein. (506 aa)
	A0A0E0P8P9	SAM domain-containing protein. (266 aa)
	A0A0E0PA24	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (380 aa)
	A0A0E0PA26	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (438 aa)
	A0A0E0PDU6	Uncharacterized protein. (389 aa)
	A0A0E0PQI9	Uncharacterized protein; Belongs to the glycosyl hydrolase 35 family. (671 aa)
	A0A0E0PZE9	Beta-galactosidase. (716 aa)
	A0A0E0Q285	Uncharacterized protein. (616 aa)
	A0A0E0Q2A2	GHMP_kinases_N domain-containing protein. (902 aa)
	A0A0E0Q5I3	Remorin_C domain-containing protein. (262 aa)
	A0A0E0Q7N7	Melibiase_C domain-containing protein; Belongs to the glycosyl hydrolase 27 family. (385 aa)
	A0A0E0QA32	Remorin_C domain-containing protein. (316 aa)
	A0A0E0QA83	Beta-hexosaminidase. (563 aa)
	A0A0E0QCS9	Alpha-galactosidase. (444 aa)
	A0A0E0QEA3	Uncharacterized protein. (425 aa)
	A0A0E0QMS1	Uncharacterized protein. (554 aa)
	A0A0E0QVN6	Aldo_ket_red domain-containing protein. (342 aa)
	A0A0E0QWE0	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (363 aa)
	A0A0E0R0S4	Alpha-galactosidase. (408 aa)
	A0A0E0R0S9	Alpha-galactosidase. (448 aa)
	A0A0E0R0W9	Uncharacterized protein. (196 aa)
	A0A0E0R5W0	Uncharacterized protein. (353 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MYG5	A0A0E0N7P6	Beta-galactosidase.	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	0.899
A0A0E0MYG5	A0A0E0NGT6	Beta-galactosidase.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.740
A0A0E0MYG5	A0A0E0NRP2	Beta-galactosidase.	Beta-hexosaminidase.	0.699
A0A0E0MYG5	A0A0E0NVU4	Beta-galactosidase.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.518
A0A0E0MYG5	A0A0E0PA24	Beta-galactosidase.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.749
A0A0E0MYG5	A0A0E0PA26	Beta-galactosidase.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.749
A0A0E0MYG5	A0A0E0PQI9	Beta-galactosidase.	Uncharacterized protein; Belongs to the glycosyl hydrolase 35 family.	0.878
A0A0E0MYG5	A0A0E0Q7N7	Beta-galactosidase.	Melibiase_C domain-containing protein; Belongs to the glycosyl hydrolase 27 family.	0.656
A0A0E0MYG5	A0A0E0QA83	Beta-galactosidase.	Beta-hexosaminidase.	0.699
A0A0E0MYG5	A0A0E0QCS9	Beta-galactosidase.	Alpha-galactosidase.	0.654
A0A0E0MYG5	A0A0E0QMS1	Beta-galactosidase.	Uncharacterized protein.	0.748
A0A0E0MYG5	A0A0E0QWE0	Beta-galactosidase.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.789
A0A0E0MYG5	A0A0E0R0S4	Beta-galactosidase.	Alpha-galactosidase.	0.657
A0A0E0MYG5	A0A0E0R0S9	Beta-galactosidase.	Alpha-galactosidase.	0.657
A0A0E0MYG5	A0A0E0R0W9	Beta-galactosidase.	Uncharacterized protein.	0.579
A0A0E0N7P6	A0A0E0MYG5	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Beta-galactosidase.	0.899
A0A0E0N7P6	A0A0E0N9N4	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Uncharacterized protein.	0.469
A0A0E0N7P6	A0A0E0NBT1	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Beta-galactosidase.	0.899
A0A0E0N7P6	A0A0E0NFQ9	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Uncharacterized protein.	0.745
A0A0E0N7P6	A0A0E0NGT6	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.917