(8 nodes) Mixed, incl. Specification of plant organ number, and Receptor-like protein 23-like network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MRN6	Uncharacterized protein. (1597 aa)
	A0A0E0NH75	Uncharacterized protein. (501 aa)
	A0A0E0P4N7	Uncharacterized protein. (570 aa)
	A0A0E0PJR7	Uncharacterized protein. (343 aa)
	A0A0E0QA25	LRRNT_2 domain-containing protein. (332 aa)
	A0A0E0QL39	Uncharacterized protein. (576 aa)
	A0A0E0R9R7	LRRNT_2 domain-containing protein. (906 aa)
	A0A0E0R9U7	LRRNT_2 domain-containing protein. (692 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MRN6	A0A0E0NH75	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A0E0MRN6	A0A0E0QL39	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A0E0NH75	A0A0E0MRN6	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A0E0NH75	A0A0E0P4N7	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A0E0NH75	A0A0E0PJR7	Uncharacterized protein.	Uncharacterized protein.	0.614
A0A0E0NH75	A0A0E0QA25	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.557
A0A0E0NH75	A0A0E0R9R7	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.462
A0A0E0NH75	A0A0E0R9U7	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.497
A0A0E0P4N7	A0A0E0NH75	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A0E0P4N7	A0A0E0QL39	Uncharacterized protein.	Uncharacterized protein.	0.435
A0A0E0PJR7	A0A0E0NH75	Uncharacterized protein.	Uncharacterized protein.	0.614
A0A0E0PJR7	A0A0E0QL39	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A0E0QA25	A0A0E0NH75	LRRNT_2 domain-containing protein.	Uncharacterized protein.	0.557
A0A0E0QA25	A0A0E0QL39	LRRNT_2 domain-containing protein.	Uncharacterized protein.	0.559
A0A0E0QL39	A0A0E0MRN6	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A0E0QL39	A0A0E0P4N7	Uncharacterized protein.	Uncharacterized protein.	0.435
A0A0E0QL39	A0A0E0PJR7	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A0E0QL39	A0A0E0QA25	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.559
A0A0E0QL39	A0A0E0R9R7	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.466
A0A0E0R9R7	A0A0E0NH75	LRRNT_2 domain-containing protein.	Uncharacterized protein.	0.462