(96 nodes) Mixed, incl. Disease resistance protein, plants, and Plant protein of unknown function network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MQH7	Usp domain-containing protein. (183 aa)
	A0A0E0MTK7	TF-B3 domain-containing protein. (467 aa)
	A0A0E0MTR5	Uncharacterized protein. (382 aa)
	A0A0E0MWJ2	F-box domain-containing protein. (391 aa)
	A0A0E0N0A2	CASP-like protein; Belongs to the Casparian strip membrane proteins (CASP) family. (412 aa)
	A0A0E0N0F9	Homeobox domain-containing protein. (556 aa)
	A0A0E0N210	F-box domain-containing protein. (444 aa)
	A0A0E0N3P2	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (803 aa)
	A0A0E0N7E6	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family. (862 aa)
	A0A0E0N7H9	DUF295 domain-containing protein. (440 aa)
	A0A0E0NBA3	NB-ARC domain-containing protein. (515 aa)
	A0A0E0ND45	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1125 aa)
	A0A0E0NE94	Uncharacterized protein. (441 aa)
	A0A0E0NI58	GUB_WAK_bind domain-containing protein. (408 aa)
	A0A0E0NIR6	Uncharacterized protein. (619 aa)
	A0A0E0NMA7	DUF295 domain-containing protein. (445 aa)
	A0A0E0NN24	Uncharacterized protein. (327 aa)
	A0A0E0NQK9	Uncharacterized protein. (573 aa)
	A0A0E0NRG3	Uncharacterized protein. (272 aa)
	A0A0E0NXE1	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (1266 aa)
	A0A0E0NXY7	Uncharacterized protein. (478 aa)
	A0A0E0NZ69	AAI domain-containing protein. (212 aa)
	A0A0E0P094	DUF295 domain-containing protein. (398 aa)
	A0A0E0P435	F-box domain-containing protein. (372 aa)
	A0A0E0P6R4	Uncharacterized protein. (307 aa)
	A0A0E0P6V5	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (1312 aa)
	A0A0E0P7Z8	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1093 aa)
	A0A0E0P9R8	F-box domain-containing protein. (547 aa)
	A0A0E0PAW8	Uncharacterized protein. (918 aa)
	A0A0E0PET0	AAI domain-containing protein. (290 aa)
	A0A0E0PEV5	Uncharacterized protein. (311 aa)
	A0A0E0PEV6	Uncharacterized protein. (631 aa)
	A0A0E0PEZ1	GUB_WAK_bind domain-containing protein. (314 aa)
	A0A0E0PEZ3	FBD domain-containing protein. (462 aa)
	A0A0E0PH91	F-box domain-containing protein. (394 aa)
	A0A0E0PI81	F-box domain-containing protein. (329 aa)
	A0A0E0PIN9	Uncharacterized protein. (672 aa)
	A0A0E0PIP3	Uncharacterized protein. (495 aa)
	A0A0E0PK50	C2H2-type domain-containing protein. (318 aa)
	A0A0E0PMH5	Uncharacterized protein. (395 aa)
	A0A0E0PNZ9	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1018 aa)
	A0A0E0PTJ8	Uncharacterized protein. (419 aa)
	A0A0E0PTJ9	DUF295 domain-containing protein. (388 aa)
	A0A0E0PTV4	FBD domain-containing protein. (467 aa)
	A0A0E0PVA7	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1492 aa)
	A0A0E0PWC2	BHLH domain-containing protein. (420 aa)
	A0A0E0Q078	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1190 aa)
	A0A0E0Q2F5	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1369 aa)
	A0A0E0Q3W3	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1491 aa)
	A0A0E0Q493	F-box domain-containing protein. (496 aa)
	A0A0E0Q4E2	F-box domain-containing protein. (591 aa)
	A0A0E0Q6I6	Uncharacterized protein. (580 aa)
	A0A0E0Q6L5	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (578 aa)
	A0A0E0Q7L5	DUF4220 domain-containing protein. (670 aa)
	A0A0E0Q7T7	Uncharacterized protein. (480 aa)
	A0A0E0Q7X3	Uncharacterized protein. (497 aa)
	A0A0E0Q9A7	PGG domain-containing protein. (222 aa)
	A0A0E0QAU1	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (981 aa)
	A0A0E0QED0	F-box domain-containing protein. (402 aa)
	A0A0E0QFD3	F-box domain-containing protein. (339 aa)
	A0A0E0QH09	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (942 aa)
	A0A0E0QH10	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (1525 aa)
	A0A0E0QJR1	Uncharacterized protein. (692 aa)
	A0A0E0QNV0	Uncharacterized protein. (556 aa)
	A0A0E0QQ42	NB-ARC domain-containing protein. (615 aa)
	A0A0E0QQD5	Uncharacterized protein. (742 aa)
	A0A0E0QRY2	Uncharacterized protein. (266 aa)
	A0A0E0QS47	F-box domain-containing protein. (287 aa)
	A0A0E0QS60	F-box domain-containing protein. (475 aa)
	A0A0E0QT65	NAC domain-containing protein. (739 aa)
	A0A0E0QTX1	Uncharacterized protein. (362 aa)
	A0A0E0QUH2	Uncharacterized protein. (429 aa)
	A0A0E0QVR5	Jacalin-type lectin domain-containing protein; Belongs to the disease resistance NB-LRR family. (1097 aa)
	A0A0E0QY28	NAC domain-containing protein. (374 aa)
	A0A0E0R002	ANK_REP_REGION domain-containing protein. (242 aa)
	A0A0E0R1Y9	DUF4220 domain-containing protein. (537 aa)
	A0A0E0R2P2	F-box domain-containing protein. (436 aa)
	A0A0E0R5C2	F-box domain-containing protein. (310 aa)
	A0A0E0R6L7	DUF4220 domain-containing protein. (547 aa)
	A0A0E0R6Q5	Uncharacterized protein. (460 aa)
	A0A0E0R6U4	Uncharacterized protein. (244 aa)
	A0A0E0R7L0	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1401 aa)
	A0A0E0R8H3	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1605 aa)
	A0A0E0R902	Uncharacterized protein. (1007 aa)
	A0A0E0RBN8	Uncharacterized protein. (294 aa)
	A0A0E0RC26	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1136 aa)
	A0A0E0RC27	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1024 aa)
	A0A0E0RC32	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (1085 aa)
	A0A0E0RE70	F-box domain-containing protein. (457 aa)
	A0A0E0REN0	Uncharacterized protein. (330 aa)
	A0A0E0RHA8	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family. (1265 aa)
	A0A0E0RHB0	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (1477 aa)
	A0A0E0RHG1	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (870 aa)
	A0A0E0RHG7	Uncharacterized protein. (347 aa)
	A0A0E0RHU5	Uncharacterized protein; Belongs to the disease resistance NB-LRR family. (930 aa)
	A0A0E0RJA6	Uncharacterized protein. (248 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MQH7	A0A0E0P6V5	Usp domain-containing protein.	NB-ARC domain-containing protein; Belongs to the disease resistance NB-LRR family.	0.446
A0A0E0MQH7	A0A0E0P9R8	Usp domain-containing protein.	F-box domain-containing protein.	0.426
A0A0E0MQH7	A0A0E0PET0	Usp domain-containing protein.	AAI domain-containing protein.	0.428
A0A0E0MQH7	A0A0E0PEV5	Usp domain-containing protein.	Uncharacterized protein.	0.409
A0A0E0MQH7	A0A0E0PEV6	Usp domain-containing protein.	Uncharacterized protein.	0.502
A0A0E0MQH7	A0A0E0PIP3	Usp domain-containing protein.	Uncharacterized protein.	0.455
A0A0E0MQH7	A0A0E0Q078	Usp domain-containing protein.	Uncharacterized protein; Belongs to the disease resistance NB-LRR family.	0.414
A0A0E0MQH7	A0A0E0QRY2	Usp domain-containing protein.	Uncharacterized protein.	0.402
A0A0E0MQH7	A0A0E0QUH2	Usp domain-containing protein.	Uncharacterized protein.	0.444
A0A0E0MQH7	A0A0E0R002	Usp domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.410
A0A0E0MQH7	A0A0E0R8H3	Usp domain-containing protein.	Uncharacterized protein; Belongs to the disease resistance NB-LRR family.	0.428
A0A0E0MQH7	A0A0E0RHG1	Usp domain-containing protein.	Uncharacterized protein; Belongs to the disease resistance NB-LRR family.	0.450
A0A0E0MTK7	A0A0E0N0F9	TF-B3 domain-containing protein.	Homeobox domain-containing protein.	0.506
A0A0E0MTK7	A0A0E0N7H9	TF-B3 domain-containing protein.	DUF295 domain-containing protein.	0.550
A0A0E0MTK7	A0A0E0NI58	TF-B3 domain-containing protein.	GUB_WAK_bind domain-containing protein.	0.422
A0A0E0MTK7	A0A0E0NIR6	TF-B3 domain-containing protein.	Uncharacterized protein.	0.560
A0A0E0MTK7	A0A0E0NMA7	TF-B3 domain-containing protein.	DUF295 domain-containing protein.	0.527
A0A0E0MTK7	A0A0E0NN24	TF-B3 domain-containing protein.	Uncharacterized protein.	0.465
A0A0E0MTK7	A0A0E0NXY7	TF-B3 domain-containing protein.	Uncharacterized protein.	0.490
A0A0E0MTK7	A0A0E0P094	TF-B3 domain-containing protein.	DUF295 domain-containing protein.	0.485