(5 nodes) Mixed, incl. Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN, and Embryonic morphogenesis network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MRE6	Uncharacterized protein. (316 aa)
	A0A0E0N6M0	Uncharacterized protein. (760 aa)
	A0A0E0NLN0	UDENN domain-containing protein. (818 aa)
	A0A0E0NWP2	F-box domain-containing protein. (250 aa)
	A0A0E0QRY5	Uncharacterized protein. (494 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MRE6	A0A0E0N6M0	Uncharacterized protein.	Uncharacterized protein.	0.483
A0A0E0MRE6	A0A0E0NWP2	Uncharacterized protein.	F-box domain-containing protein.	0.422
A0A0E0MRE6	A0A0E0QRY5	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A0E0N6M0	A0A0E0MRE6	Uncharacterized protein.	Uncharacterized protein.	0.483
A0A0E0N6M0	A0A0E0NLN0	Uncharacterized protein.	UDENN domain-containing protein.	0.473
A0A0E0N6M0	A0A0E0NWP2	Uncharacterized protein.	F-box domain-containing protein.	0.407
A0A0E0N6M0	A0A0E0QRY5	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A0E0NLN0	A0A0E0N6M0	UDENN domain-containing protein.	Uncharacterized protein.	0.473
A0A0E0NWP2	A0A0E0MRE6	F-box domain-containing protein.	Uncharacterized protein.	0.422
A0A0E0NWP2	A0A0E0N6M0	F-box domain-containing protein.	Uncharacterized protein.	0.407
A0A0E0NWP2	A0A0E0QRY5	F-box domain-containing protein.	Uncharacterized protein.	0.514
A0A0E0QRY5	A0A0E0MRE6	Uncharacterized protein.	Uncharacterized protein.	0.491
A0A0E0QRY5	A0A0E0N6M0	Uncharacterized protein.	Uncharacterized protein.	0.497
A0A0E0QRY5	A0A0E0NWP2	Uncharacterized protein.	F-box domain-containing protein.	0.514