(18 nodes) Nucleosome core, and At5g08430-like network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0N5X7	Uncharacterized protein. (865 aa)
	A0A0E0NEF4	Histone domain-containing protein. (211 aa)
	A0A0E0NEQ7	Uncharacterized protein. (517 aa)
	A0A0E0NJB5	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A0A0E0NNW7	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (75 aa)
	A0A0E0NQ13	Histone H2A; Belongs to the histone H2A family. (138 aa)
	A0A0E0NTD1	Histone H2B; Belongs to the histone H2B family. (152 aa)
	A0A0E0P2L1	H15 domain-containing protein. (293 aa)
	A0A0E0P6F4	H15 domain-containing protein. (191 aa)
	A0A0E0P928	Histone H3; Belongs to the histone H3 family. (136 aa)
	A0A0E0P9W0	Histone H3; Belongs to the histone H3 family. (136 aa)
	A0A0E0PD77	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A0A0E0PMN4	Uncharacterized protein. (728 aa)
	A0A0E0PNM2	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	A0A0E0QJ94	Histone H2A; Belongs to the histone H2A family. (134 aa)
	A0A0E0QKJ7	Histone H2B; Belongs to the histone H2B family. (153 aa)
	A0A0E0QVD1	Histone domain-containing protein; Belongs to the histone H2B family. (194 aa)
	A0A0E0RI58	Histone H2A; Belongs to the histone H2A family. (138 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0N5X7	A0A0E0NEF4	Uncharacterized protein.	Histone domain-containing protein.	0.908
A0A0E0N5X7	A0A0E0NEQ7	Uncharacterized protein.	Uncharacterized protein.	0.906
A0A0E0N5X7	A0A0E0NJB5	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.959
A0A0E0N5X7	A0A0E0NNW7	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.959
A0A0E0N5X7	A0A0E0NQ13	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.722
A0A0E0N5X7	A0A0E0NTD1	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.772
A0A0E0N5X7	A0A0E0P2L1	Uncharacterized protein.	H15 domain-containing protein.	0.815
A0A0E0N5X7	A0A0E0P928	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.908
A0A0E0N5X7	A0A0E0P9W0	Uncharacterized protein.	Histone H3; Belongs to the histone H3 family.	0.908
A0A0E0N5X7	A0A0E0PD77	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.959
A0A0E0N5X7	A0A0E0PNM2	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.959
A0A0E0N5X7	A0A0E0QJ94	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.815
A0A0E0N5X7	A0A0E0QKJ7	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.772
A0A0E0N5X7	A0A0E0QVD1	Uncharacterized protein.	Histone domain-containing protein; Belongs to the histone H2B family.	0.772
A0A0E0N5X7	A0A0E0RI58	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.815
A0A0E0NEF4	A0A0E0N5X7	Histone domain-containing protein.	Uncharacterized protein.	0.908
A0A0E0NEF4	A0A0E0NEQ7	Histone domain-containing protein.	Uncharacterized protein.	0.890
A0A0E0NEF4	A0A0E0NJB5	Histone domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.832
A0A0E0NEF4	A0A0E0NNW7	Histone domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.803
A0A0E0NEF4	A0A0E0NQ13	Histone domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.876