(5 nodes) HMGB9-like, ARID/BRIGHT DNA binding domain, and SWI/SNF complex network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NB42	Uncharacterized protein. (511 aa)
	A0A0E0NKB1	Uncharacterized protein. (244 aa)
	A0A0E0P862	SWIB domain-containing protein. (572 aa)
	A0A0E0QE43	Uncharacterized protein; Belongs to the actin family. (433 aa)
	A0A0E0QUK2	Uncharacterized protein. (306 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0NB42	A0A0E0NKB1	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A0E0NB42	A0A0E0P862	Uncharacterized protein.	SWIB domain-containing protein.	0.962
A0A0E0NB42	A0A0E0QE43	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.960
A0A0E0NB42	A0A0E0QUK2	Uncharacterized protein.	Uncharacterized protein.	0.888
A0A0E0NKB1	A0A0E0NB42	Uncharacterized protein.	Uncharacterized protein.	0.941
A0A0E0NKB1	A0A0E0P862	Uncharacterized protein.	SWIB domain-containing protein.	0.994
A0A0E0NKB1	A0A0E0QE43	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.993
A0A0E0NKB1	A0A0E0QUK2	Uncharacterized protein.	Uncharacterized protein.	0.951
A0A0E0P862	A0A0E0NB42	SWIB domain-containing protein.	Uncharacterized protein.	0.962
A0A0E0P862	A0A0E0NKB1	SWIB domain-containing protein.	Uncharacterized protein.	0.994
A0A0E0P862	A0A0E0QE43	SWIB domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.997
A0A0E0P862	A0A0E0QUK2	SWIB domain-containing protein.	Uncharacterized protein.	0.966
A0A0E0QE43	A0A0E0NB42	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.960
A0A0E0QE43	A0A0E0NKB1	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.993
A0A0E0QE43	A0A0E0P862	Uncharacterized protein; Belongs to the actin family.	SWIB domain-containing protein.	0.997
A0A0E0QE43	A0A0E0QUK2	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.996
A0A0E0QUK2	A0A0E0NB42	Uncharacterized protein.	Uncharacterized protein.	0.888
A0A0E0QUK2	A0A0E0NKB1	Uncharacterized protein.	Uncharacterized protein.	0.951
A0A0E0QUK2	A0A0E0P862	Uncharacterized protein.	SWIB domain-containing protein.	0.966
A0A0E0QUK2	A0A0E0QE43	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.996