53 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0P511	Uncharacterized protein. (213 aa)
	A0A0E0R2U2	Uncharacterized protein. (451 aa)
	A0A0E0R531	DNA polymerase. (1082 aa)
	A0A0E0NEJ9	Uncharacterized protein. (251 aa)
	A0A0E0NDP1	Uncharacterized protein. (243 aa)
	A0A0E0N5K1	DNA polymerase. (1506 aa)
	A0A0E0N2N3	UmuC domain-containing protein. (634 aa)
	A0A0E0N218	DNA_pol3_gamma3 domain-containing protein. (1022 aa)
	A0A0E0MYE7	RECA_2 domain-containing protein. (398 aa)
	A0A0E0MT45	Uncharacterized protein. (225 aa)
	A0A0E0PIX5	Uncharacterized protein. (1226 aa)
	A0A0E0PGU8	Uncharacterized protein. (234 aa)
	A0A0E0PGK4	Uncharacterized protein. (193 aa)
	A0A0E0PCU4	AAA domain-containing protein. (344 aa)
	A0A0E0P7S1	Uncharacterized protein. (417 aa)
	A0A0E0QY73	Uncharacterized protein. (191 aa)
	A0A0E0NRJ4	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (630 aa)
	A0A0E0NSV0	AAA domain-containing protein. (969 aa)
	A0A0E0MSU3	Uncharacterized protein. (557 aa)
	A0A0E0RG45	AAA domain-containing protein. (963 aa)
	A0A0E0P2E5	AAA domain-containing protein. (353 aa)
	A0A0E0RFH5	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (576 aa)
	A0A0E0RF42	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	A0A0E0NGG8	RECA_2 domain-containing protein. (292 aa)
	A0A0E0NI64	Uncharacterized protein. (298 aa)
	A0A0E0NJU4	Uncharacterized protein. (729 aa)
	A0A0E0NLA6	CCHC-type domain-containing protein; Plays an important role in the control of DNA replication and the maintenance of replication fork stability. Belongs to the CSM3 family. (324 aa)
	A0A0E0NLL5	AAA domain-containing protein. (346 aa)
	A0A0E0NLM8	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses. (656 aa)
	A0A0E0NN91	RPA_C domain-containing protein. (279 aa)
	A0A0E0NP59	Uncharacterized protein. (447 aa)
	A0A0E0NYC7	Uncharacterized protein. (381 aa)
	A0A0E0R6A8	DNA_pol3_gamma3 domain-containing protein. (1183 aa)
	A0A0E0R9X8	Replication factor C subunit 1. (987 aa)
	A0A0E0RB78	Uncharacterized protein. (216 aa)
	A0A0E0PLB1	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (426 aa)
	A0A0E0PQ99	DNA_pol3_gamma3 domain-containing protein. (1083 aa)
	A0A0E0PXT6	Uncharacterized protein. (420 aa)
	A0A0E0Q208	Uncharacterized protein. (448 aa)
	A0A0E0Q717	Uncharacterized protein. (427 aa)
	A0A0E0Q7H3	Uncharacterized protein. (143 aa)
	A0A0E0QAT3	Uncharacterized protein. (1100 aa)
	A0A0E0QBR5	Uncharacterized protein. (714 aa)
	A0A0E0QDQ7	AAA domain-containing protein. (733 aa)
	A0A0E0QEQ4	Uncharacterized protein. (151 aa)
	A0A0E0QLY3	Uncharacterized protein. (134 aa)
	A0A0E0QMP6	RECA_2 domain-containing protein. (283 aa)
	A0A0E0QNC8	WD_REPEATS_REGION domain-containing protein. (1133 aa)
	A0A0E0QNN6	Uncharacterized protein. (196 aa)
	A0A0E0NEX3	Uncharacterized protein. (280 aa)
	A0A0E0QPR0	ULP_PROTEASE domain-containing protein. (107 aa)
	A0A0E0QTY0	Uncharacterized protein. (131 aa)
	A0A0E0QUG6	Zf-primase domain-containing protein. (414 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MSU3	A0A0E0N218	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.591
A0A0E0MSU3	A0A0E0N2N3	Uncharacterized protein.	UmuC domain-containing protein.	0.500
A0A0E0MSU3	A0A0E0N5K1	Uncharacterized protein.	DNA polymerase.	0.678
A0A0E0MSU3	A0A0E0NGG8	Uncharacterized protein.	RECA_2 domain-containing protein.	0.433
A0A0E0MSU3	A0A0E0NJU4	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A0E0MSU3	A0A0E0NLL5	Uncharacterized protein.	AAA domain-containing protein.	0.609
A0A0E0MSU3	A0A0E0NP59	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A0E0MSU3	A0A0E0NRJ4	Uncharacterized protein.	Replication protein A subunit; Component of the replication protein A complex (RPA) required for DNA recombination, repair and replication. The activity of RPA is mediated by single-stranded DNA binding and protein interactions. Probably involved in repair of double-strand DNA breaks (DSBs) induced by genotoxic stresses.	0.563
A0A0E0MSU3	A0A0E0P2E5	Uncharacterized protein.	AAA domain-containing protein.	0.495
A0A0E0MSU3	A0A0E0PCU4	Uncharacterized protein.	AAA domain-containing protein.	0.598
A0A0E0MSU3	A0A0E0PLB1	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.493
A0A0E0MSU3	A0A0E0PQ99	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.591
A0A0E0MSU3	A0A0E0Q717	Uncharacterized protein.	Uncharacterized protein.	0.810
A0A0E0MSU3	A0A0E0QDQ7	Uncharacterized protein.	AAA domain-containing protein.	0.591
A0A0E0MSU3	A0A0E0QEQ4	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A0E0MSU3	A0A0E0QLY3	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0E0MSU3	A0A0E0QTY0	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A0E0MSU3	A0A0E0R2U2	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A0E0MSU3	A0A0E0R531	Uncharacterized protein.	DNA polymerase.	0.942
A0A0E0MSU3	A0A0E0R6A8	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.591