12 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0PCU4	AAA domain-containing protein. (344 aa)
	A0A0E0RG45	AAA domain-containing protein. (963 aa)
	A0A0E0RF42	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	A0A0E0R9X8	Replication factor C subunit 1. (987 aa)
	A0A0E0R6A8	DNA_pol3_gamma3 domain-containing protein. (1183 aa)
	A0A0E0R2U2	Uncharacterized protein. (451 aa)
	A0A0E0QDQ7	AAA domain-containing protein. (733 aa)
	A0A0E0PQ99	DNA_pol3_gamma3 domain-containing protein. (1083 aa)
	A0A0E0P2E5	AAA domain-containing protein. (353 aa)
	A0A0E0NLL5	AAA domain-containing protein. (346 aa)
	A0A0E0NJU4	Uncharacterized protein. (729 aa)
	A0A0E0N218	DNA_pol3_gamma3 domain-containing protein. (1022 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0N218	A0A0E0NJU4	DNA_pol3_gamma3 domain-containing protein.	Uncharacterized protein.	0.965
A0A0E0N218	A0A0E0NLL5	DNA_pol3_gamma3 domain-containing protein.	AAA domain-containing protein.	0.990
A0A0E0N218	A0A0E0P2E5	DNA_pol3_gamma3 domain-containing protein.	AAA domain-containing protein.	0.965
A0A0E0N218	A0A0E0PCU4	DNA_pol3_gamma3 domain-containing protein.	AAA domain-containing protein.	0.978
A0A0E0N218	A0A0E0QDQ7	DNA_pol3_gamma3 domain-containing protein.	AAA domain-containing protein.	0.435
A0A0E0N218	A0A0E0R2U2	DNA_pol3_gamma3 domain-containing protein.	Uncharacterized protein.	0.965
A0A0E0N218	A0A0E0R6A8	DNA_pol3_gamma3 domain-containing protein.	DNA_pol3_gamma3 domain-containing protein.	0.450
A0A0E0N218	A0A0E0R9X8	DNA_pol3_gamma3 domain-containing protein.	Replication factor C subunit 1.	0.930
A0A0E0N218	A0A0E0RF42	DNA_pol3_gamma3 domain-containing protein.	DNA_pol3_gamma3 domain-containing protein.	0.448
A0A0E0N218	A0A0E0RG45	DNA_pol3_gamma3 domain-containing protein.	AAA domain-containing protein.	0.448
A0A0E0NJU4	A0A0E0N218	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.965
A0A0E0NJU4	A0A0E0NLL5	Uncharacterized protein.	AAA domain-containing protein.	0.994
A0A0E0NJU4	A0A0E0P2E5	Uncharacterized protein.	AAA domain-containing protein.	0.876
A0A0E0NJU4	A0A0E0PCU4	Uncharacterized protein.	AAA domain-containing protein.	0.994
A0A0E0NJU4	A0A0E0PQ99	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.965
A0A0E0NJU4	A0A0E0QDQ7	Uncharacterized protein.	AAA domain-containing protein.	0.965
A0A0E0NJU4	A0A0E0R2U2	Uncharacterized protein.	Uncharacterized protein.	0.889
A0A0E0NJU4	A0A0E0R6A8	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.965
A0A0E0NJU4	A0A0E0R9X8	Uncharacterized protein.	Replication factor C subunit 1.	0.975
A0A0E0NJU4	A0A0E0RF42	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.965