31 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MZ67	Uncharacterized protein. (252 aa)
	A0A0E0RK20	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (170 aa)
	A0A0E0RI16	Ribosomal_L2 domain-containing protein. (282 aa)
	A0A0E0RHZ6	Uncharacterized protein. (75 aa)
	A0A0E0RG30	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (170 aa)
	A0A0E0RFH8	Uncharacterized protein. (130 aa)
	A0A0E0R102	Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family. (274 aa)
	A0A0E0QYX6	Uncharacterized protein. (119 aa)
	A0A0E0QL56	MRP-S28 domain-containing protein. (389 aa)
	A0A0E0QH78	Ribosomal_L18e/L15P domain-containing protein. (265 aa)
	A0A0E0QEP0	Uncharacterized protein. (143 aa)
	A0A0E0QC71	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (415 aa)
	A0A0E0Q9J4	Uncharacterized protein. (204 aa)
	A0A0E0Q763	Uncharacterized protein. (228 aa)
	A0A0E0Q5C7	Uncharacterized protein. (357 aa)
	A0A0E0PYT7	Ribosomal_S10 domain-containing protein. (108 aa)
	A0A0E0PWQ6	Uncharacterized protein. (248 aa)
	A0A0E0PSY0	Uncharacterized protein. (145 aa)
	A0A0E0PJF9	Uncharacterized protein. (301 aa)
	A0A0E0PGB4	Uncharacterized protein. (137 aa)
	A0A0E0NX35	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (327 aa)
	A0A0E0NVX1	Uncharacterized protein. (272 aa)
	A0A0E0NRA2	L51_S25_CI-B8 domain-containing protein. (119 aa)
	A0A0E0NQ97	Uncharacterized protein. (113 aa)
	A0A0E0NHU4	Uncharacterized protein. (186 aa)
	A0A0E0N8H2	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (536 aa)
	A0A0E0N687	Uncharacterized protein. (86 aa)
	A0A0E0N3T3	Uncharacterized protein. (132 aa)
	A0A0E0MZA0	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (278 aa)
	A0A0E0MY81	Uncharacterized protein. (146 aa)
	A0A0E0MX49	Uncharacterized protein. (266 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MX49	A0A0E0MY81	Uncharacterized protein.	Uncharacterized protein.	0.791
A0A0E0MX49	A0A0E0MZ67	Uncharacterized protein.	Uncharacterized protein.	0.720
A0A0E0MX49	A0A0E0MZA0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.889
A0A0E0MX49	A0A0E0N687	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A0E0MX49	A0A0E0N8H2	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.791
A0A0E0MX49	A0A0E0NHU4	Uncharacterized protein.	Uncharacterized protein.	0.791
A0A0E0MX49	A0A0E0NQ97	Uncharacterized protein.	Uncharacterized protein.	0.720
A0A0E0MX49	A0A0E0NRA2	Uncharacterized protein.	L51_S25_CI-B8 domain-containing protein.	0.917
A0A0E0MX49	A0A0E0NVX1	Uncharacterized protein.	Uncharacterized protein.	0.720
A0A0E0MX49	A0A0E0PGB4	Uncharacterized protein.	Uncharacterized protein.	0.720
A0A0E0MX49	A0A0E0PJF9	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A0E0MX49	A0A0E0PSY0	Uncharacterized protein.	Uncharacterized protein.	0.917
A0A0E0MX49	A0A0E0PWQ6	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A0E0MX49	A0A0E0PYT7	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.720
A0A0E0MX49	A0A0E0Q5C7	Uncharacterized protein.	Uncharacterized protein.	0.791
A0A0E0MX49	A0A0E0Q763	Uncharacterized protein.	Uncharacterized protein.	0.917
A0A0E0MX49	A0A0E0Q9J4	Uncharacterized protein.	Uncharacterized protein.	0.791
A0A0E0MX49	A0A0E0QC71	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.791
A0A0E0MX49	A0A0E0QEP0	Uncharacterized protein.	Uncharacterized protein.	0.862
A0A0E0MX49	A0A0E0QH78	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein.	0.917