(36 nodes) Macroautophagy network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MSQ2	Autophagy-related protein 3. (354 aa)
	A0A0E0MZ91	Uncharacterized protein. (1041 aa)
	A0A0E0MRW3	Uncharacterized protein. (417 aa)
	A0A0E0N0T2	Uncharacterized protein. (495 aa)
	A0A0E0MSA5	Spatacsin_C domain-containing protein. (3088 aa)
	A0A0E0RGW5	Uncharacterized protein. (247 aa)
	A0A0E0RGM7	TAXi_N domain-containing protein. (661 aa)
	A0A0E0R4L1	ATG13 domain-containing protein. (601 aa)
	A0A0E0R2G1	Autophagy-related protein 3. (273 aa)
	A0A0E0QZN4	Uncharacterized protein. (817 aa)
	A0A0E0QWN1	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (926 aa)
	A0A0E0QR94	WD_REPEATS_REGION domain-containing protein. (1624 aa)
	A0A0E0QIZ3	Uncharacterized protein. (848 aa)
	A0A0E0QH65	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (901 aa)
	A0A0E0QCJ7	Uncharacterized protein. (584 aa)
	A0A0E0Q0I7	Uncharacterized protein. (451 aa)
	A0A0E0PUU5	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family. (228 aa)
	A0A0E0PIA9	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (815 aa)
	A0A0E0PI30	Ribosomal_L16 domain-containing protein. (584 aa)
	A0A0E0PC39	ATG13 domain-containing protein. (520 aa)
	A0A0E0PA76	Uncharacterized protein. (373 aa)
	A0A0E0P9C9	Uncharacterized protein. (331 aa)
	A0A0E0P5R3	Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic. (960 aa)
	A0A0E0P289	Uncharacterized protein. (1342 aa)
	A0A0E0P184	WD_REPEATS_REGION domain-containing protein. (511 aa)
	A0A0E0NYT2	Uncharacterized protein. (648 aa)
	A0A0E0NSZ3	Protein kinase domain-containing protein. (696 aa)
	A0A0E0NSP8	Uncharacterized protein. (393 aa)
	A0A0E0NSG1	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (806 aa)
	A0A0E0NPS8	Uncharacterized protein. (843 aa)
	A0A0E0NNY6	Protein kinase domain-containing protein. (657 aa)
	A0A0E0NM56	Uncharacterized protein. (1491 aa)
	A0A0E0NM04	Uncharacterized protein. (374 aa)
	A0A0E0NIE6	ATG13 domain-containing protein. (544 aa)
	A0A0E0NAQ8	Integrase-type domain-containing protein. (1140 aa)
	A0A0E0N7A0	WD_REPEATS_REGION domain-containing protein. (457 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MRW3	A0A0E0MZ91	Uncharacterized protein.	Uncharacterized protein.	0.546
A0A0E0MRW3	A0A0E0N0T2	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A0E0MRW3	A0A0E0NM04	Uncharacterized protein.	Uncharacterized protein.	0.725
A0A0E0MRW3	A0A0E0NSP8	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A0E0MRW3	A0A0E0NYT2	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A0E0MSA5	A0A0E0P289	Spatacsin_C domain-containing protein.	Uncharacterized protein.	0.427
A0A0E0MSA5	A0A0E0QR94	Spatacsin_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.482
A0A0E0MSQ2	A0A0E0MZ91	Autophagy-related protein 3.	Uncharacterized protein.	0.983
A0A0E0MSQ2	A0A0E0N0T2	Autophagy-related protein 3.	Uncharacterized protein.	0.853
A0A0E0MSQ2	A0A0E0NAQ8	Autophagy-related protein 3.	Integrase-type domain-containing protein.	0.465
A0A0E0MSQ2	A0A0E0NIE6	Autophagy-related protein 3.	ATG13 domain-containing protein.	0.596
A0A0E0MSQ2	A0A0E0NM04	Autophagy-related protein 3.	Uncharacterized protein.	0.879
A0A0E0MSQ2	A0A0E0NM56	Autophagy-related protein 3.	Uncharacterized protein.	0.834
A0A0E0MSQ2	A0A0E0NNY6	Autophagy-related protein 3.	Protein kinase domain-containing protein.	0.898
A0A0E0MSQ2	A0A0E0NSG1	Autophagy-related protein 3.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.403
A0A0E0MSQ2	A0A0E0NSP8	Autophagy-related protein 3.	Uncharacterized protein.	0.853
A0A0E0MSQ2	A0A0E0NSZ3	Autophagy-related protein 3.	Protein kinase domain-containing protein.	0.898
A0A0E0MSQ2	A0A0E0NYT2	Autophagy-related protein 3.	Uncharacterized protein.	0.853
A0A0E0MSQ2	A0A0E0P184	Autophagy-related protein 3.	WD_REPEATS_REGION domain-containing protein.	0.995
A0A0E0MSQ2	A0A0E0PC39	Autophagy-related protein 3.	ATG13 domain-containing protein.	0.596