(20 nodes) Interstrand cross-link repair network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0Q452	Uncharacterized protein. (1489 aa)
	A0A0E0PGW6	Uncharacterized protein. (348 aa)
	A0A0E0QDE2	Uncharacterized protein. (663 aa)
	A0A0E0QRX3	SAM domain-containing protein. (966 aa)
	A0A0E0R216	RING-type domain-containing protein. (584 aa)
	A0A0E0NFR2	Uncharacterized protein. (987 aa)
	A0A0E0N5V4	DRMBL domain-containing protein. (698 aa)
	A0A0E0PU40	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (930 aa)
	A0A0E0R4Z1	Uncharacterized protein. (1454 aa)
	A0A0E0P0Q6	Uncharacterized protein. (292 aa)
	A0A0E0MYQ9	Helicase ATP-binding domain-containing protein. (787 aa)
	A0A0E0N3D2	DRMBL domain-containing protein. (454 aa)
	A0A0E0P8I0	Uncharacterized protein. (241 aa)
	A0A0E0P8M1	DRMBL domain-containing protein. (503 aa)
	A0A0E0NNF5	ERCC4 domain-containing protein. (1325 aa)
	A0A0E0NMQ7	Uncharacterized protein. (855 aa)
	A0A0E0NKS3	Uncharacterized protein. (92 aa)
	A0A0E0NT64	RING-type domain-containing protein. (596 aa)
	A0A0E0PVL8	Uncharacterized protein. (96 aa)
	A0A0E0PZF0	FA_FANCE domain-containing protein. (484 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MYQ9	A0A0E0NFR2	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.673
A0A0E0MYQ9	A0A0E0NNF5	Helicase ATP-binding domain-containing protein.	ERCC4 domain-containing protein.	0.797
A0A0E0MYQ9	A0A0E0P0Q6	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.441
A0A0E0MYQ9	A0A0E0PU40	Helicase ATP-binding domain-containing protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.504
A0A0E0MYQ9	A0A0E0Q452	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.683
A0A0E0MYQ9	A0A0E0R4Z1	Helicase ATP-binding domain-containing protein.	Uncharacterized protein.	0.595
A0A0E0N3D2	A0A0E0NNF5	DRMBL domain-containing protein.	ERCC4 domain-containing protein.	0.629
A0A0E0N3D2	A0A0E0P0Q6	DRMBL domain-containing protein.	Uncharacterized protein.	0.526
A0A0E0N3D2	A0A0E0PU40	DRMBL domain-containing protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.661
A0A0E0N3D2	A0A0E0Q452	DRMBL domain-containing protein.	Uncharacterized protein.	0.672
A0A0E0N3D2	A0A0E0R4Z1	DRMBL domain-containing protein.	Uncharacterized protein.	0.589
A0A0E0N5V4	A0A0E0NNF5	DRMBL domain-containing protein.	ERCC4 domain-containing protein.	0.629
A0A0E0N5V4	A0A0E0P0Q6	DRMBL domain-containing protein.	Uncharacterized protein.	0.526
A0A0E0N5V4	A0A0E0PU40	DRMBL domain-containing protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.661
A0A0E0N5V4	A0A0E0Q452	DRMBL domain-containing protein.	Uncharacterized protein.	0.672
A0A0E0N5V4	A0A0E0R4Z1	DRMBL domain-containing protein.	Uncharacterized protein.	0.589
A0A0E0NFR2	A0A0E0MYQ9	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.673
A0A0E0NFR2	A0A0E0NNF5	Uncharacterized protein.	ERCC4 domain-containing protein.	0.664
A0A0E0NFR2	A0A0E0P8I0	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A0E0NFR2	A0A0E0PU40	Uncharacterized protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.471