(69 nodes) Ribosome assembly network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0NG55	Tr-type G domain-containing protein. (1003 aa)
	A0A0E0MR79	Uncharacterized protein. (264 aa)
	A0A0E0MR81	Uncharacterized protein. (268 aa)
	A0A0E0MR82	Uncharacterized protein. (277 aa)
	A0A0E0MRB8	Uncharacterized protein. (580 aa)
	A0A0E0MS66	Uncharacterized protein. (331 aa)
	A0A0E0MSC3	Uncharacterized protein. (625 aa)
	A0A0E0MSU4	Uncharacterized protein. (245 aa)
	A0A0E0MTB3	Uncharacterized protein. (601 aa)
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (226 aa)
	A0A0E0MVZ9	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (152 aa)
	A0A0E0MX71	Brix domain-containing protein. (310 aa)
	A0A0E0MZ67	Uncharacterized protein. (252 aa)
	A0A0E0MZA0	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (278 aa)
	A0A0E0N241	Uncharacterized protein. (97 aa)
	A0A0E0N316	Uncharacterized protein. (243 aa)
	A0A0E0NA83	Uncharacterized protein. (199 aa)
	A0A0E0NEW1	40S ribosomal protein S27. (86 aa)
	A0A0E0NFY9	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	A0A0E0NH52	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (219 aa)
	A0A0E0NH53	Brix domain-containing protein. (331 aa)
	A0A0E0NHR1	Uncharacterized protein. (144 aa)
	A0A0E0NKF8	RRP7 domain-containing protein. (366 aa)
	A0A0E0NQL3	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (305 aa)
	A0A0E0NUK8	Ribosomal_L16 domain-containing protein. (225 aa)
	A0A0E0NUW5	Brix domain-containing protein. (360 aa)
	A0A0E0NVX1	Uncharacterized protein. (272 aa)
	A0A0E0NW98	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (298 aa)
	A0A0E0NWR1	Uncharacterized protein. (336 aa)
	A0A0E0NYY0	Tr-type G domain-containing protein. (1035 aa)
	A0A0E0NZ78	Uncharacterized protein. (232 aa)
	A0A0E0P252	Uncharacterized protein. (270 aa)
	A0A0E0P253	Uncharacterized protein. (822 aa)
	A0A0E0P2K9	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (154 aa)
	A0A0E0P4G8	Uncharacterized protein. (238 aa)
	A0A0E0P7K5	40S ribosomal protein S27. (86 aa)
	A0A0E0P8J9	40S ribosomal protein S27. (86 aa)
	A0A0E0P8Y0	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (224 aa)
	A0A0E0PAF1	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family. (222 aa)
	A0A0E0PB60	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family. (174 aa)
	A0A0E0PH17	Uncharacterized protein. (122 aa)
	A0A0E0PHD8	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (397 aa)
	A0A0E0PIA0	Uncharacterized protein. (311 aa)
	A0A0E0PNF6	Uncharacterized protein. (303 aa)
	A0A0E0PPQ7	Brix domain-containing protein. (323 aa)
	A0A0E0PQ18	WD_REPEATS_REGION domain-containing protein. (804 aa)
	A0A0E0PQ85	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (121 aa)
	A0A0E0PRC9	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (423 aa)
	A0A0E0PX73	Uncharacterized protein. (262 aa)
	A0A0E0Q4X5	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (250 aa)
	A0A0E0QB96	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (305 aa)
	EIF6-2	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	A0A0E0QCC1	RRM domain-containing protein. (249 aa)
	A0A0E0QCJ8	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (188 aa)
	A0A0E0QDE1	Uncharacterized protein. (457 aa)
	A0A0E0QDY5	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (319 aa)
	A0A0E0QFN1	Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family. (461 aa)
	A0A0E0QJI9	Uncharacterized protein. (233 aa)
	A0A0E0QUZ5	Uncharacterized protein. (248 aa)
	A0A0E0QVJ0	WD_REPEATS_REGION domain-containing protein. (475 aa)
	A0A0E0QZ08	Uncharacterized protein. (87 aa)
	A0A0E0QZY2	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (5220 aa)
	A0A0E0R3A3	Tr-type G domain-containing protein. (186 aa)
	A0A0E0R5Y8	Uncharacterized protein. (68 aa)
	A0A0E0RAF0	WD_REPEATS_REGION domain-containing protein. (480 aa)
	A0A0E0RCM1	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (329 aa)
	A0A0E0RDD2	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (319 aa)
	A0A0E0REC5	Uncharacterized protein. (169 aa)
	rpl20	50S ribosomal protein L20, chloroplastic; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0MRB8	A0A0E0MSC3	A0A0E0MRB8	A0A0E0MSC3	Uncharacterized protein.	Uncharacterized protein.	0.537
A0A0E0MRB8	A0A0E0MVZ9	A0A0E0MRB8	A0A0E0MVZ9	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.867
A0A0E0MRB8	A0A0E0MX71	A0A0E0MRB8	A0A0E0MX71	Uncharacterized protein.	Brix domain-containing protein.	0.976
A0A0E0MRB8	A0A0E0MZA0	A0A0E0MRB8	A0A0E0MZA0	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.778
A0A0E0MRB8	A0A0E0NH52	A0A0E0MRB8	A0A0E0NH52	Uncharacterized protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.838
A0A0E0MRB8	A0A0E0NKF8	A0A0E0MRB8	A0A0E0NKF8	Uncharacterized protein.	RRP7 domain-containing protein.	0.877
A0A0E0MRB8	A0A0E0NUW5	A0A0E0MRB8	A0A0E0NUW5	Uncharacterized protein.	Brix domain-containing protein.	0.978
A0A0E0MRB8	A0A0E0NZ78	A0A0E0MRB8	A0A0E0NZ78	Uncharacterized protein.	Uncharacterized protein.	0.785
A0A0E0MRB8	A0A0E0PAF1	A0A0E0MRB8	A0A0E0PAF1	Uncharacterized protein.	60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.	0.838
A0A0E0MRB8	A0A0E0PB60	A0A0E0MRB8	A0A0E0PB60	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.867
A0A0E0MRB8	A0A0E0PH17	A0A0E0MRB8	A0A0E0PH17	Uncharacterized protein.	Uncharacterized protein.	0.578
A0A0E0MRB8	A0A0E0PHD8	A0A0E0MRB8	A0A0E0PHD8	Uncharacterized protein.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.785
A0A0E0MRB8	A0A0E0PPQ7	A0A0E0MRB8	A0A0E0PPQ7	Uncharacterized protein.	Brix domain-containing protein.	0.976
A0A0E0MRB8	A0A0E0PQ18	A0A0E0MRB8	A0A0E0PQ18	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.892
A0A0E0MRB8	A0A0E0QCC1	A0A0E0MRB8	A0A0E0QCC1	Uncharacterized protein.	RRM domain-containing protein.	0.578
A0A0E0MRB8	A0A0E0QCJ8	A0A0E0MRB8	A0A0E0QCJ8	Uncharacterized protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.993
A0A0E0MRB8	A0A0E0QDE1	A0A0E0MRB8	A0A0E0QDE1	Uncharacterized protein.	Uncharacterized protein.	0.895
A0A0E0MRB8	A0A0E0QDY5	A0A0E0MRB8	A0A0E0QDY5	Uncharacterized protein.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.933
A0A0E0MRB8	A0A0E0QVJ0	A0A0E0MRB8	A0A0E0QVJ0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.488
A0A0E0MRB8	A0A0E0RAF0	A0A0E0MRB8	A0A0E0RAF0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.488