22 items (Oryza rufipogon) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0QTY0	Uncharacterized protein. (131 aa)
	A0A0E0QK27	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (492 aa)
	A0A0E0QEQ4	Uncharacterized protein. (151 aa)
	A0A0E0QDQ7	AAA domain-containing protein. (733 aa)
	A0A0E0QCI3	Uncharacterized protein. (1754 aa)
	A0A0E0Q717	Uncharacterized protein. (427 aa)
	A0A0E0Q5J3	Uncharacterized protein. (347 aa)
	A0A0E0PQ99	DNA_pol3_gamma3 domain-containing protein. (1083 aa)
	A0A0E0PLB1	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (426 aa)
	A0A0E0PHW3	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (500 aa)
	A0A0E0NP59	Uncharacterized protein. (447 aa)
	A0A0E0NFE0	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2143 aa)
	A0A0E0N5K1	DNA polymerase. (1506 aa)
	A0A0E0N218	DNA_pol3_gamma3 domain-containing protein. (1022 aa)
	A0A0E0MSU3	Uncharacterized protein. (557 aa)
	A0A0E0RG45	AAA domain-containing protein. (963 aa)
	A0A0E0RFH5	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis. (576 aa)
	A0A0E0RF42	DNA_pol3_gamma3 domain-containing protein. (1174 aa)
	A0A0E0R6A8	DNA_pol3_gamma3 domain-containing protein. (1183 aa)
	A0A0E0R531	DNA polymerase. (1082 aa)
	A0A0E0QVA0	CBFD_NFYB_HMF domain-containing protein. (167 aa)
	A0A0E0QLY3	Uncharacterized protein. (134 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MSU3	A0A0E0N218	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.591
A0A0E0MSU3	A0A0E0N5K1	Uncharacterized protein.	DNA polymerase.	0.678
A0A0E0MSU3	A0A0E0NFE0	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.817
A0A0E0MSU3	A0A0E0NP59	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A0E0MSU3	A0A0E0PHW3	Uncharacterized protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.525
A0A0E0MSU3	A0A0E0PLB1	Uncharacterized protein.	DNA primase; Belongs to the eukaryotic-type primase small subunit family.	0.493
A0A0E0MSU3	A0A0E0PQ99	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.591
A0A0E0MSU3	A0A0E0Q5J3	Uncharacterized protein.	Uncharacterized protein.	0.784
A0A0E0MSU3	A0A0E0Q717	Uncharacterized protein.	Uncharacterized protein.	0.810
A0A0E0MSU3	A0A0E0QCI3	Uncharacterized protein.	Uncharacterized protein.	0.784
A0A0E0MSU3	A0A0E0QDQ7	Uncharacterized protein.	AAA domain-containing protein.	0.591
A0A0E0MSU3	A0A0E0QEQ4	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A0E0MSU3	A0A0E0QK27	Uncharacterized protein.	DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.	0.525
A0A0E0MSU3	A0A0E0QLY3	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A0E0MSU3	A0A0E0QTY0	Uncharacterized protein.	Uncharacterized protein.	0.949
A0A0E0MSU3	A0A0E0R531	Uncharacterized protein.	DNA polymerase.	0.942
A0A0E0MSU3	A0A0E0R6A8	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.591
A0A0E0MSU3	A0A0E0RF42	Uncharacterized protein.	DNA_pol3_gamma3 domain-containing protein.	0.591
A0A0E0MSU3	A0A0E0RFH5	Uncharacterized protein.	DNA polymerase alpha subunit B; Accessory subunit of the DNA polymerase alpha complex (also known as the alpha DNA polymerase-primase complex) which plays an essential role in the initiation of DNA synthesis.	0.702
A0A0E0MSU3	A0A0E0RG45	Uncharacterized protein.	AAA domain-containing protein.	0.591