(54 nodes) Late endosome to vacuole transport network (Oryza rufipogon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0E0MQ97	Uncharacterized protein. (270 aa)
	A0A0E0MTF9	Uncharacterized protein. (711 aa)
	A0A0E0MUV0	Uncharacterized protein. (419 aa)
	A0A0E0N078	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (332 aa)
	A0A0E0N0T2	Uncharacterized protein. (495 aa)
	A0A0E0N3B5	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (213 aa)
	A0A0E0N3Z5	GLUE N-terminal domain-containing protein. (447 aa)
	A0A0E0N8A4	Uncharacterized protein. (652 aa)
	A0A0E0NCX6	Uncharacterized protein. (703 aa)
	A0A0E0NEJ2	Phospho-2-dehydro-3-deoxyheptonate aldolase. (354 aa)
	A0A0E0NGK7	Uncharacterized protein. (134 aa)
	A0A0E0NHA1	Uncharacterized protein. (228 aa)
	A0A0E0NI92	BRO1 domain-containing protein. (373 aa)
	A0A0E0NJM0	Uncharacterized protein. (729 aa)
	A0A0E0NM56	Uncharacterized protein. (1491 aa)
	A0A0E0NMD4	Uncharacterized protein. (136 aa)
	A0A0E0NSP8	Uncharacterized protein. (393 aa)
	A0A0E0NT68	Uncharacterized protein. (241 aa)
	A0A0E0NYP3	Uncharacterized protein. (268 aa)
	A0A0E0NYP7	Uncharacterized protein. (194 aa)
	A0A0E0NYT2	Uncharacterized protein. (648 aa)
	A0A0E0P0G0	Uncharacterized protein. (257 aa)
	A0A0E0PEE6	Uncharacterized protein. (505 aa)
	A0A0E0PGC4	Uncharacterized protein. (232 aa)
	A0A0E0PKY8	Uncharacterized protein. (597 aa)
	A0A0E0PM20	Uncharacterized protein. (1655 aa)
	A0A0E0PNW7	Uncharacterized protein. (625 aa)
	A0A0E0PWW9	Uncharacterized protein. (488 aa)
	A0A0E0PXA8	Uncharacterized protein. (655 aa)
	A0A0E0Q001	Uncharacterized protein. (220 aa)
	A0A0E0Q0Q1	Uncharacterized protein. (205 aa)
	A0A0E0Q5E3	Uncharacterized protein. (68 aa)
	A0A0E0Q5Z3	Uncharacterized protein. (250 aa)
	A0A0E0Q815	zf-LSD1 domain-containing protein. (356 aa)
	A0A0E0Q856	Uncharacterized protein. (229 aa)
	A0A0E0Q8F7	Uncharacterized protein. (97 aa)
	A0A0E0QDF3	Uncharacterized protein. (401 aa)
	A0A0E0QDY2	Uncharacterized protein. (147 aa)
	A0A0E0QEL8	Uncharacterized protein. (190 aa)
	A0A0E0QK51	Uncharacterized protein. (121 aa)
	A0A0E0QMK7	Uncharacterized protein. (372 aa)
	A0A0E0QS87	Uncharacterized protein. (539 aa)
	A0A0E0QU66	Uncharacterized protein. (85 aa)
	A0A0E0R0C9	Uncharacterized protein. (212 aa)
	A0A0E0R0V5	BRO1 domain-containing protein. (846 aa)
	A0A0E0R2V2	J domain-containing protein. (2632 aa)
	A0A0E0R3B4	Uncharacterized protein. (112 aa)
	A0A0E0R3J8	Uncharacterized protein. (216 aa)
	A0A0E0R5B9	Uncharacterized protein. (522 aa)
	A0A0E0RCA8	Uncharacterized protein. (224 aa)
	A0A0E0RCU0	Uncharacterized protein. (128 aa)
	A0A0E0RD20	Uncharacterized protein. (284 aa)
	A0A0E0RGF8	Uncharacterized protein. (419 aa)
	A0A0E0RJV9	Uncharacterized protein. (152 aa)

Your Current Organism:

Oryza rufipogon

NCBI taxonomy Id: 4529
Other names: O. rufipogon, Oryza rufipogon Griff., common wild rice, red rice

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0MQ97	A0A0E0MUV0	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A0E0MQ97	A0A0E0N3B5	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.552
A0A0E0MQ97	A0A0E0N3Z5	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.465
A0A0E0MQ97	A0A0E0NEJ2	Uncharacterized protein.	Phospho-2-dehydro-3-deoxyheptonate aldolase.	0.594
A0A0E0MQ97	A0A0E0NHA1	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A0E0MQ97	A0A0E0NI92	Uncharacterized protein.	BRO1 domain-containing protein.	0.594
A0A0E0MQ97	A0A0E0NT68	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A0E0MQ97	A0A0E0NYP3	Uncharacterized protein.	Uncharacterized protein.	0.825
A0A0E0MQ97	A0A0E0NYP7	Uncharacterized protein.	Uncharacterized protein.	0.825
A0A0E0MQ97	A0A0E0P0G0	Uncharacterized protein.	Uncharacterized protein.	0.594
A0A0E0MQ97	A0A0E0PGC4	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A0E0MQ97	A0A0E0PWW9	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A0E0MQ97	A0A0E0Q001	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A0E0MQ97	A0A0E0Q0Q1	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A0E0MQ97	A0A0E0Q5E3	Uncharacterized protein.	Uncharacterized protein.	0.825
A0A0E0MQ97	A0A0E0Q5Z3	Uncharacterized protein.	Uncharacterized protein.	0.863
A0A0E0MQ97	A0A0E0Q815	Uncharacterized protein.	zf-LSD1 domain-containing protein.	0.825
A0A0E0MQ97	A0A0E0Q856	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A0E0MQ97	A0A0E0Q8F7	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A0E0MQ97	A0A0E0QDY2	Uncharacterized protein.	Uncharacterized protein.	0.825